miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
15320657 NC_003083.1 Epiphyas postvittana nucleopolyhedrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
11297 - 3148 88 19.5 -24.6 NP_203175 5' arm      3' arm
11290 + 87250 89 22 -27.3 NP_203275 5' arm      3' arm
11292 + 100668 90 21 -22.6 NP_203288 5' arm      3' arm
11293 + 105144 90 25 -19.7 NP_203291 5' arm      3' arm
11295 + 109585 90 20 -25 NP_203297 5' arm      3' arm
11294 + 108541 90 19.5 -21.1 NP_203295 5' arm      3' arm
11296 + 114306 89 23.5 -24 NP_203300 5' arm      3' arm
11311 - 115128 87 21.5 -21.2 NP_203301 5' arm      3' arm
11312 - 115419 89 20 -22.5 NP_203302 5' arm      3' arm
11291 + 89913 89 22.5 -23 NP_203277 5' arm      3' arm
11288 + 72849 89 21.5 -19.8 NP_203256 5' arm      3' arm
11289 + 73676 89 23 -23.4 NP_203257 5' arm      3' arm
11280 + 18992 90 20.5 -32.3 5' arm      3' arm
11281 + 24020 90 20 -26.4 NP_203201 5' arm      3' arm
11282 + 32170 90 19 -25.7 NP_203211 5' arm      3' arm
11283 + 43293 89 23 -31.7 NP_203226 5' arm      3' arm
11284 + 51300 90 24 -30.1 NP_203231 5' arm      3' arm
11285 + 51632 90 21.5 -20.1 NP_203231 5' arm      3' arm
11286 + 56817 89 20.5 -21.4 NP_203241 5' arm      3' arm
11287 + 57889 86 20 -23.3 NP_203243 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.