miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635576 NC_002470.1 Turkey astrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8783 + 68 90 24 -30.3 NP_059947 5' arm      3' arm
8784 + 3116 88 20.5 -20.6 NP_059947 5' arm      3' arm
8785 + 3979 88 21 -22.5 NP_853540 5' arm      3' arm
8786 + 5399 89 20 -20 NP_059949 5' arm      3' arm
8787 - 6079 85 20 -20.6 NP_059949 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.