miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9635572 NC_002469.1 Ovine astrovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8776 + 1246 90 25.5 -34.4 NP_059944 5' arm      3' arm
8777 + 1412 90 21.5 -25.72 NP_059944 5' arm      3' arm
8778 + 1592 87 21 -34.1 NP_059944 5' arm      3' arm
8779 + 3968 89 20 -22.9 NP_059945 5' arm      3' arm
8780 + 4593 90 25.5 -25.4 NP_059946 5' arm      3' arm
8781 + 4957 90 21.5 -20.1 NP_059946 5' arm      3' arm
8782 + 6167 88 23 -28.1 NP_059946 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.