miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
11067737 NC_002588.1 Chayote mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9782 + 4827 90 23.5 -19.6 NP_067737 5' arm      3' arm
9783 - 829 82 20 -20.3 NP_067736 5' arm      3' arm
9784 - 2232 88 19.5 -28 NP_067737 5' arm      3' arm
9785 - 2515 90 21.5 -25.3 NP_067737 5' arm      3' arm
9786 - 2690 89 19.5 -20.8 NP_067737 5' arm      3' arm
9787 - 4581 89 20.5 -21.4 NP_067737 5' arm      3' arm
9788 - 4916 90 20.5 -25.6 NP_067737 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.