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GenBank Identifier | RefSeq Acc. | Name |
9630960 | NC_001963.1 | Sphaeropsis sapinea RNA virus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
7592 | + | 1517 | 89 | 19 | -32.2 | NP_047557 | 5' arm 3' arm | ||
7605 | - | 2570 | 90 | 20 | -31.6 | NP_047557 | 5' arm 3' arm | ||
7603 | - | 2168 | 90 | 20 | -27.1 | NP_047557 | 5' arm 3' arm | ||
7604 | - | 2256 | 88 | 21.5 | -26.8 | NP_047557 | 5' arm 3' arm | ||
7587 | + | 352 | 88 | 19 | -25.5 | NP_047557 | 5' arm 3' arm | ||
7607 | - | 3392 | 90 | 24.5 | -25.1 | NP_047558 | 5' arm 3' arm | ||
7608 | - | 3711 | 88 | 21.5 | -24.8 | NP_047558 | 5' arm 3' arm | ||
7588 | + | 662 | 89 | 22.5 | -24.7 | NP_047557 | 5' arm 3' arm | ||
7602 | - | 2019 | 79 | 19 | -24.5 | NP_047557 | 5' arm 3' arm | ||
7598 | + | 3782 | 86 | 23 | -23.4 | NP_047558 | 5' arm 3' arm | ||
7600 | + | 4680 | 89 | 23 | -23.2 | NP_047558 | 5' arm 3' arm | ||
7610 | - | 4673 | 90 | 20 | -23 | NP_047558 | 5' arm 3' arm | ||
7596 | + | 2733 | 90 | 24 | -23 | NP_047558 | 5' arm 3' arm | ||
7590 | + | 1038 | 88 | 21 | -22.9 | NP_047557 | 5' arm 3' arm | ||
7599 | + | 4245 | 89 | 24 | -22.1 | NP_047558 | 5' arm 3' arm | ||
7597 | + | 3136 | 88 | 20.5 | -22 | NP_047558 | 5' arm 3' arm | ||
7589 | + | 943 | 89 | 21 | -21.7 | NP_047557 | 5' arm 3' arm | ||
7606 | - | 3169 | 89 | 20.5 | -21.5 | NP_047558 | 5' arm 3' arm | ||
7591 | + | 1364 | 89 | 19.5 | -21.2 | NP_047557 | 5' arm 3' arm | ||
7601 | - | 911 | 89 | 19.5 | -20.8 | NP_047557 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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