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GenBank Identifier | RefSeq Acc. | Name |
58042841 | NC_005137.2 | Choristoneura fumiferana defective nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22915 | - | 1189 | 90 | 24 | -20.5 | NP_932611 | 5' arm 3' arm | ||
22916 | - | 4365 | 88 | 19 | -23.2 | NP_932617 | 5' arm 3' arm | ||
22917 | - | 7744 | 89 | 21.5 | -26.2 | NP_932619 | 5' arm 3' arm | ||
22918 | - | 10922 | 89 | 20.5 | -24.5 | NP_932623 | 5' arm 3' arm | ||
22919 | - | 12790 | 89 | 20.5 | -22.6 | NP_932625 | 5' arm 3' arm | ||
22920 | - | 16634 | 90 | 22 | -22.2 | NP_932630 | 5' arm 3' arm | ||
22921 | - | 19609 | 87 | 21.5 | -29.6 | NP_932633 | 5' arm 3' arm | ||
22922 | - | 22676 | 88 | 19.5 | -31.1 | NP_932638 | 5' arm 3' arm | ||
22923 | - | 24378 | 89 | 23 | -21.6 | NP_932640 | 5' arm 3' arm | ||
22924 | - | 26736 | 90 | 22.5 | -31.6 | NP_932642 | 5' arm 3' arm | ||
22925 | - | 27536 | 87 | 19.5 | -22.7 | NP_932644 | 5' arm 3' arm | ||
22926 | - | 28043 | 87 | 19 | -25.3 | NP_932645 | 5' arm 3' arm | ||
22927 | - | 31764 | 88 | 20.5 | -23.11 | NP_932650 | 5' arm 3' arm | ||
22928 | - | 32663 | 90 | 22 | -26.7 | NP_932651 | 5' arm 3' arm | ||
22929 | - | 33075 | 88 | 22.5 | -22.1 | NP_932651 | 5' arm 3' arm | ||
22930 | - | 33345 | 90 | 20.5 | -23.1 | NP_932651 | 5' arm 3' arm | ||
22931 | - | 34722 | 90 | 19 | -22.3 | NP_932654 | 5' arm 3' arm | ||
22932 | - | 35489 | 89 | 27.5 | -22.12 | NP_932654 | 5' arm 3' arm | ||
22933 | - | 36596 | 90 | 22.5 | -26.7 | NP_932655 | 5' arm 3' arm | ||
22934 | - | 41365 | 89 | 22 | -20.29 | NP_932658 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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