miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
27881465 NC_004542.1 Canine calicivirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
17683 + 2309 88 20 -25.4 NP_777373 5' arm      3' arm
17684 + 4106 84 21.5 -21.9 NP_777373 5' arm      3' arm
17685 + 6922 89 24.5 -23.8 NP_777374 5' arm      3' arm
17686 + 7876 89 20.5 -27.2 NP_777375 5' arm      3' arm
17687 - 3053 80 20.5 -26.6 NP_777373 5' arm      3' arm
17688 - 4755 88 20 -22.8 NP_777373 5' arm      3' arm
17689 - 7963 87 20.5 -22.3 NP_777375 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.