miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9634672 NC_002187.1 Japanese iris necrotic ring virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8582 + 2434 86 20 -24.2 NP_038456 5' arm      3' arm
8585 - 854 90 20 -21.3 NP_038454 5' arm      3' arm
8583 + 2716 89 21 -31.7 NP_038458 5' arm      3' arm
8584 + 3758 90 21 -19.6 5' arm      3' arm
8581 + 683 89 21.5 -25.5 NP_038455 5' arm      3' arm
8586 - 1981 90 23.5 -23.4 NP_038454 5' arm      3' arm
8580 + 98 90 25.5 -22.7 NP_038453 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.