miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22855189 NC_004168.1 Marine birnavirus segment A

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16723 - 440 89 24.5 -23.5 NP_690805 5' arm      3' arm
16726 - 2576 90 24 -24.2 NP_690805 5' arm      3' arm
16727 - 2965 90 20.5 -32.9 NP_690805 5' arm      3' arm
16724 - 2106 88 20.5 -21.2 NP_690805 5' arm      3' arm
16725 - 2242 90 20 -23 NP_690805 5' arm      3' arm
16802 - 2212 89 20 -24.3 NP_690835 5' arm      3' arm
16803 - 2567 87 20 -21.9 NP_690835 5' arm      3' arm
16800 - 1574 90 20.5 -30.3 NP_690835 5' arm      3' arm
16799 - 770 90 23.5 -23.5 NP_690835 5' arm      3' arm
16801 - 1786 90 20 -21.5 NP_690835 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.