miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9632978 NC_000874.1 Sugarcane yellow leaf virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
825 + 1012 87 19.5 -20.9 NP_050006 5' arm      3' arm
827 + 5432 89 20.5 -22.5 NP_050010 5' arm      3' arm
826 + 5327 90 19 -30.5 NP_050010 5' arm      3' arm
830 - 5146 86 23.5 -25.3 NP_050010 5' arm      3' arm
829 - 4362 89 23 -21.5 NP_050010 5' arm      3' arm
828 - 3778 90 21 -21 NP_050010 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.