miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
11068003 NC_002593.1 Plutella xylostella granulovirus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9803 - 30807 90 20 -22.7 NP_068256 5' arm      3' arm
9811 - 51818 86 20 -19.5 NP_068286 5' arm      3' arm
9810 - 38636 85 19 -26.6 NP_068268 5' arm      3' arm
9808 - 35426 90 24.5 -21.04 NP_068262 5' arm      3' arm
9809 - 36454 85 20.5 -29.2 NP_068264 5' arm      3' arm
9807 - 35317 88 19 -22.5 NP_068262 5' arm      3' arm
9805 - 31250 80 23 -21 NP_068256 5' arm      3' arm
9802 - 28841 78 21 -23.2 NP_068254 5' arm      3' arm
9806 - 31725 89 20.5 -21.2 NP_068256 5' arm      3' arm
9812 - 70328 90 21.5 -23.7 NP_068308 5' arm      3' arm
9813 - 81323 90 21.5 -20.4 NP_068317 5' arm      3' arm
9804 - 30941 78 20 -29.1 NP_068256 5' arm      3' arm
9801 - 23416 87 21 -28.1 NP_068249 5' arm      3' arm
9799 - 11043 90 22.5 -25.3 NP_068237 5' arm      3' arm
9800 - 11134 89 22.5 -24.2 NP_068237 5' arm      3' arm
9791 + 17912 72 22 -22.7 NP_068244 5' arm      3' arm
9793 + 29112 88 22 -22.41 NP_068254 5' arm      3' arm
9794 + 30909 89 19.5 -23.8 NP_068256 5' arm      3' arm
9796 + 38587 89 20 -22.4 NP_068268 5' arm      3' arm
9797 + 67568 89 21.5 -28.8 NP_068303 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.