miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20889342 NC_003872.1 Satellite RNA of Blackcurrant reversion virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15328 + 1248 90 24.5 -22.3 5' arm      3' arm
15327 + 722 90 21 -22.8 NP_624321 5' arm      3' arm
15326 + 624 89 19 -22.5 NP_624321 5' arm      3' arm
15329 - 173 87 22.5 -30.6 NP_624321 5' arm      3' arm
15330 - 583 88 19 -24.8 NP_624321 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.