Results 21 - 30 of 30 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 13134 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 16202 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 19271 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | + | 52961 | 0.66 | 0.99439 |
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Target: 5'- uAGCUUgGGGGCguccggcuggGGUCAGGg-- -3' miRNA: 3'- -UUGAGgCCCCGa---------CUAGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 122599 | 0.66 | 0.995222 |
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Target: 5'- ---aCCGuGGGCaUGAUCAGGg-- -3' miRNA: 3'- uugaGGC-CCCG-ACUAGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | + | 171188 | 0.66 | 0.996587 |
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Target: 5'- gGGCUCCGGGGgCUG--CGGGc-- -3' miRNA: 3'- -UUGAGGCCCC-GACuaGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 63548 | 0.66 | 0.996587 |
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Target: 5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3' miRNA: 3'- uuGAgGCCCCGACua------GUCCAAU- -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | + | 169591 | 0.66 | 0.996587 |
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Target: 5'- gGGCUCCGGGGgCUG--CGGGc-- -3' miRNA: 3'- -UUGAGGCCCC-GACuaGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | + | 170128 | 0.66 | 0.996587 |
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Target: 5'- gGGCUCCGGGGgCUG--CGGGc-- -3' miRNA: 3'- -UUGAGGCCCC-GACuaGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | + | 125704 | 0.66 | 0.997137 |
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Target: 5'- cACUCCGGGa--GAUCAGGa-- -3' miRNA: 3'- uUGAGGCCCcgaCUAGUCCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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