miRNA display CGI


Results 1 - 20 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170748 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 127894 0.66 1
Target:  5'- gGCGGGGuGCucuGAUGCGGAAAAg- -3'
miRNA:   3'- -CGUUCC-CGc--UUACGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170226 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 171286 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 169688 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 40160 0.66 0.999999
Target:  5'- gGCAGGGGgGGggGCAGuGAGg- -3'
miRNA:   3'- -CGUUCCCgCUuaCGUCuUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 86210 0.66 0.999999
Target:  5'- cGCAucaGGCGAagGCGGAGAAg- -3'
miRNA:   3'- -CGUuc-CCGCUuaCGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 98532 0.67 0.999998
Target:  5'- uGUggGGuGCGAagGCGGGAGAc- -3'
miRNA:   3'- -CGuuCC-CGCUuaCGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 32056 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 57813 0.67 0.999996
Target:  5'- -gGGGGGCGAugggGCGGAAcGUGg -3'
miRNA:   3'- cgUUCCCGCUua--CGUCUUuUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 19780 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 13642 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 16711 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 22849 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 25918 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 105357 0.67 0.999996
Target:  5'- aCGGGGGCGccccugGCAGAGAGg- -3'
miRNA:   3'- cGUUCCCGCuua---CGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 108443 0.67 0.999996
Target:  5'- -uGGGGuGCGggUGCGGguGAUGg -3'
miRNA:   3'- cgUUCC-CGCuuACGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 28987 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 35124 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 57881 0.67 0.999994
Target:  5'- -aGGGGGCGGcgGCcGGAGGUGg -3'
miRNA:   3'- cgUUCCCGCUuaCGuCUUUUAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.