miRNA display CGI


Results 41 - 60 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 102837 0.74 0.568387
Target:  5'- -gGCGCGCCGGCCgCGUCCa- -3'
miRNA:   3'- ggCGCGCGGUCGG-GUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 103538 0.68 0.888287
Target:  5'- gCCGcCGUaGCCGGCCag-CCCCa -3'
miRNA:   3'- -GGC-GCG-CGGUCGGguaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 103777 0.66 0.951063
Target:  5'- aCCGCGCGCguGCCaggCCg- -3'
miRNA:   3'- -GGCGCGCGguCGGguaGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 113920 0.67 0.894589
Target:  5'- aCCGUGUGUCcacucugGGCUCGUCCCUc -3'
miRNA:   3'- -GGCGCGCGG-------UCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 115933 0.66 0.951063
Target:  5'- -aGCGCGUCAGCa-GUCCgCCg -3'
miRNA:   3'- ggCGCGCGGUCGggUAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 124838 0.66 0.931859
Target:  5'- cUCGCGCGCCAG-CgGUCCg- -3'
miRNA:   3'- -GGCGCGCGGUCgGgUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 126073 0.69 0.815015
Target:  5'- gCCGCGUGCCGGaUCCAgcggUCCaCCu -3'
miRNA:   3'- -GGCGCGCGGUC-GGGU----AGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 127772 0.67 0.902017
Target:  5'- cCCG-GUGCCAGUCCAUCUg- -3'
miRNA:   3'- -GGCgCGCGGUCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 134222 0.68 0.88105
Target:  5'- aCgGC-CGCCAcGCCCGUgCCCg -3'
miRNA:   3'- -GgCGcGCGGU-CGGGUAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 143164 0.66 0.931859
Target:  5'- aCgGCGCGCCG---CAUCCCCa -3'
miRNA:   3'- -GgCGCGCGGUcggGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 144167 0.66 0.946647
Target:  5'- cUCGCGCGCCGagaucGCCgAggCCCUg -3'
miRNA:   3'- -GGCGCGCGGU-----CGGgUa-GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 144470 0.69 0.83278
Target:  5'- cUCGCGCGCCGGCgUcUCgCCg -3'
miRNA:   3'- -GGCGCGCGGUCGgGuAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 144909 0.67 0.908502
Target:  5'- gCGCGCGCCcGCUCAagccgCCCg -3'
miRNA:   3'- gGCGCGCGGuCGGGUa----GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 148556 0.66 0.941976
Target:  5'- aCGgGCGCC-GCCCGUUCUUu -3'
miRNA:   3'- gGCgCGCGGuCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 151793 0.7 0.805856
Target:  5'- gCGCGCGCCcaGGCUCAuggagUCCUCg -3'
miRNA:   3'- gGCGCGCGG--UCGGGU-----AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 153379 0.66 0.940524
Target:  5'- gCGCGUGCCcugcgucgaccguuGGCCCuucuUUCCCu -3'
miRNA:   3'- gGCGCGCGG--------------UCGGGu---AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 153417 0.69 0.83278
Target:  5'- uCCGCGCGCU-GCUCGUCaCCg -3'
miRNA:   3'- -GGCGCGCGGuCGGGUAGgGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 154237 0.66 0.951063
Target:  5'- uUCGUGCGgccgcCCAGCuCCAUCCgCa -3'
miRNA:   3'- -GGCGCGC-----GGUCG-GGUAGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 156851 0.7 0.805856
Target:  5'- uCCGCGUGCgC-GCCCAUCCg- -3'
miRNA:   3'- -GGCGCGCG-GuCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 161843 0.71 0.737497
Target:  5'- aCGUGCGCCAGUUCGUCUUUg -3'
miRNA:   3'- gGCGCGCGGUCGGGUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.