miRNA display CGI


Results 41 - 60 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 119426 0.71 0.747646
Target:  5'- gCUGCGCGCCGGUCUcUUUCCa -3'
miRNA:   3'- -GGCGCGCGGUCGGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 118882 0.68 0.857915
Target:  5'- cCCGCGUGUUuuuCCCAUUCCCu -3'
miRNA:   3'- -GGCGCGCGGuc-GGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 118286 0.7 0.787033
Target:  5'- cCCGCGUGCCcGCCacuUCCaCCg -3'
miRNA:   3'- -GGCGCGCGGuCGGgu-AGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 116293 0.68 0.865858
Target:  5'- aCCGCgaacuGCGCCAGgCCuUCCCg -3'
miRNA:   3'- -GGCG-----CGCGGUCgGGuAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 116234 0.77 0.401138
Target:  5'- aCGCGCGCC-GCCCGUCUCa -3'
miRNA:   3'- gGCGCGCGGuCGGGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 113775 0.69 0.849749
Target:  5'- cCCGCGCGCCc-CCCGggcaaCCCg -3'
miRNA:   3'- -GGCGCGCGGucGGGUag---GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 112498 0.69 0.815015
Target:  5'- uCCuCGCGCCAGCCCccgCCgCg -3'
miRNA:   3'- -GGcGCGCGGUCGGGua-GGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 111584 0.71 0.727248
Target:  5'- gCCGCGCuaugcgGCCAGgCC-UCCCCu -3'
miRNA:   3'- -GGCGCG------CGGUCgGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 106751 0.74 0.547421
Target:  5'- gCUGgGCGUCAGCCUcuauAUCCCCg -3'
miRNA:   3'- -GGCgCGCGGUCGGG----UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 104596 1.01 0.011334
Target:  5'- gCCGCGCGCCAGCCCAUCCCCc -3'
miRNA:   3'- -GGCGCGCGGUCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 104266 0.69 0.849749
Target:  5'- aCGCGCGaCCugGGCaCCAucaUCCCCa -3'
miRNA:   3'- gGCGCGC-GG--UCG-GGU---AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 103722 0.66 0.948444
Target:  5'- -gGCGCGCCAGCUCGaacgcaucaacacgcUUUCCg -3'
miRNA:   3'- ggCGCGCGGUCGGGU---------------AGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 103443 0.67 0.908502
Target:  5'- uCCGCGCGaCCuGCuCCGUCacguaCCCg -3'
miRNA:   3'- -GGCGCGC-GGuCG-GGUAG-----GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 103360 0.69 0.83278
Target:  5'- aCGUG-GCCAGCaCCAgCCCCg -3'
miRNA:   3'- gGCGCgCGGUCG-GGUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 95760 0.66 0.946647
Target:  5'- gCC-CGUGCCGGgaCCC-UCCCCg -3'
miRNA:   3'- -GGcGCGCGGUC--GGGuAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 95117 0.73 0.621524
Target:  5'- gCCgGgGCGUC-GCCCGUCCCCa -3'
miRNA:   3'- -GG-CgCGCGGuCGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 94644 0.73 0.600185
Target:  5'- gCCGCGCccggugcCCGGCCCAcggCCCCg -3'
miRNA:   3'- -GGCGCGc------GGUCGGGUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 94189 0.68 0.876592
Target:  5'- cCCGCGgGUCcuGGCCCgcgcaugcgcaccggGUCCCCu -3'
miRNA:   3'- -GGCGCgCGG--UCGGG---------------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 79298 0.66 0.937047
Target:  5'- -gGCGCGUgGGCCCAgCCUg -3'
miRNA:   3'- ggCGCGCGgUCGGGUaGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 72270 0.68 0.873572
Target:  5'- -aGCGCGUCuacgAGCUCGUCUCCg -3'
miRNA:   3'- ggCGCGCGG----UCGGGUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.