Results 21 - 40 of 148 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 22493 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 35104 | 0.66 | 0.999242 |
Target: 5'- aGGGGGGcugACACCGGGCc----- -3' miRNA: 3'- aUUCCCC---UGUGGUCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 98380 | 0.66 | 0.999056 |
Target: 5'- aGAGGGGucGCAaaagcgggcCCAGGcCAUGCAc -3' miRNA: 3'- aUUCCCC--UGU---------GGUCC-GUAUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 16355 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 26088 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 35294 | 0.66 | 0.998245 |
Target: 5'- cAGGGGGGCGgggauggcCCGGGUggACAGa -3' miRNA: 3'- aUUCCCCUGU--------GGUCCGuaUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 153927 | 0.66 | 0.998245 |
Target: 5'- gGAGGGGGC-CaGGGCcUGCAGg -3' miRNA: 3'- aUUCCCCUGuGgUCCGuAUGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38914 | 0.66 | 0.998832 |
Target: 5'- --cGGGGGCAgCGGGCGgcCGc -3' miRNA: 3'- auuCCCCUGUgGUCCGUauGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 25562 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | - | 19424 | 0.66 | 0.998245 |
Target: 5'- aGAGGGGACGCCuaGGGUc----- -3' miRNA: 3'- aUUCCCCUGUGG--UCCGuauguu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38843 | 0.67 | 0.996315 |
Target: 5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3' miRNA: 3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 171245 | 0.67 | 0.996912 |
Target: 5'- -cGGGGGGCGCCGcGCGggcGCAGc -3' miRNA: 3'- auUCCCCUGUGGUcCGUa--UGUU- -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38289 | 0.67 | 0.995625 |
Target: 5'- --cGGGGGCAgCCGGGCGgcCGc -3' miRNA: 3'- auuCCCCUGU-GGUCCGUauGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 39038 | 0.67 | 0.995625 |
Target: 5'- --cGGGGGCAgCCGGGCGgcCGc -3' miRNA: 3'- auuCCCCUGU-GGUCCGUauGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38468 | 0.67 | 0.996315 |
Target: 5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3' miRNA: 3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38539 | 0.67 | 0.995625 |
Target: 5'- --cGGGGGCAgCCGGGCGgcCGc -3' miRNA: 3'- auuCCCCUGU-GGUCCGUauGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 39592 | 0.67 | 0.996315 |
Target: 5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3' miRNA: 3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 39663 | 0.67 | 0.995625 |
Target: 5'- --cGGGGGCAgCCGGGCGgcCGc -3' miRNA: 3'- auuCCCCUGU-GGUCCGUauGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 39717 | 0.67 | 0.996315 |
Target: 5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3' miRNA: 3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5' |
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MIMAT0003716 | ebv-miR-BART17-3p | -47.1 | NC_007605.1 | + | 38967 | 0.67 | 0.996315 |
Target: 5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3' miRNA: 3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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