miRNA display CGI


Results 21 - 40 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39413 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39467 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39538 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39592 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39663 0.67 0.995625
Target:  5'- --cGGGGGCAgCCGGGCGgcCGc -3'
miRNA:   3'- auuCCCCUGU-GGUCCGUauGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 39717 0.67 0.996315
Target:  5'- gUGGGGGGugGCCccgcuGGGCAccgcUGCGc -3'
miRNA:   3'- -AUUCCCCugUGG-----UCCGU----AUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 40393 0.69 0.990439
Target:  5'- gGAGGccgccgcaaGGACGCCGGGCcgGCu- -3'
miRNA:   3'- aUUCC---------CCUGUGGUCCGuaUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 52245 0.72 0.945911
Target:  5'- -cGGGGGcgaaGCACC-GGCGUGCGAg -3'
miRNA:   3'- auUCCCC----UGUGGuCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 56227 0.7 0.973383
Target:  5'- aAGGGGGGCACUgAGGCG-GCGGg -3'
miRNA:   3'- aUUCCCCUGUGG-UCCGUaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 60244 0.66 0.998564
Target:  5'- cUGAGGGccGGCACCAGGag-GCGc -3'
miRNA:   3'- -AUUCCC--CUGUGGUCCguaUGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 60571 0.66 0.998564
Target:  5'- -cGGcGGGugGCCAGGCccaACGAc -3'
miRNA:   3'- auUC-CCCugUGGUCCGua-UGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 60636 0.67 0.997427
Target:  5'- gAGGGaGGugGgCCAGGCAaGCGGu -3'
miRNA:   3'- aUUCC-CCugU-GGUCCGUaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 61447 0.68 0.993931
Target:  5'- cGGGGGcGGCGgCGGGCGUAgAGg -3'
miRNA:   3'- aUUCCC-CUGUgGUCCGUAUgUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 61652 0.67 0.997869
Target:  5'- cGAGcGGGACACCcgGGGC--ACAGa -3'
miRNA:   3'- aUUC-CCCUGUGG--UCCGuaUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 62824 0.68 0.992904
Target:  5'- -cAGGGGugGCUGGGCGUcuGCc- -3'
miRNA:   3'- auUCCCCugUGGUCCGUA--UGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 80477 0.72 0.945911
Target:  5'- ---uGGGuuACCAGGCAUACAGc -3'
miRNA:   3'- auucCCCugUGGUCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 81989 0.66 0.999056
Target:  5'- -cAGGGGGCACCcguGGCcccGUugAGg -3'
miRNA:   3'- auUCCCCUGUGGu--CCG---UAugUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 83023 0.67 0.997869
Target:  5'- cGGGGGGGCAUCuGGCuc-CGAg -3'
miRNA:   3'- aUUCCCCUGUGGuCCGuauGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 92958 0.67 0.996856
Target:  5'- aGAGGGGGCuguuCCuGGCAagagucuUGCAGg -3'
miRNA:   3'- aUUCCCCUGu---GGuCCGU-------AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 101184 0.68 0.991744
Target:  5'- --uGGGGuacgcaGCCAGGCGUugAAg -3'
miRNA:   3'- auuCCCCug----UGGUCCGUAugUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.