miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 5' -64 NC_002794.1 + 110 0.67 0.591917
Target:  5'- cCGGCCGaCCGCacgaaacgccgaccgGaGCCCGggacCGCCGcaggGGCg -3'
miRNA:   3'- -GUCGGC-GGCG---------------C-CGGGCa---GCGGCa---UCG- -5'
10711 5' -64 NC_002794.1 + 4172 0.71 0.335478
Target:  5'- gGGUCGUCGCGGUggGUCGUCGaGGCa -3'
miRNA:   3'- gUCGGCGGCGCCGggCAGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 10328 0.67 0.559975
Target:  5'- uCGGCCGUCGuCGGCgCCG-CGaCCG-GGUg -3'
miRNA:   3'- -GUCGGCGGC-GCCG-GGCaGC-GGCaUCG- -5'
10711 5' -64 NC_002794.1 + 11076 0.68 0.495973
Target:  5'- uGGUaCGCCGCcuGCCuCGUCGUCGgcGCc -3'
miRNA:   3'- gUCG-GCGGCGc-CGG-GCAGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 11652 0.68 0.504929
Target:  5'- gCGGCCGacgaCGCGGCCCGcCgGCCa---- -3'
miRNA:   3'- -GUCGGCg---GCGCCGGGCaG-CGGcaucg -5'
10711 5' -64 NC_002794.1 + 11807 0.71 0.371887
Target:  5'- -cGCCGCCGCcG-CCGUCGCCGccuucGCu -3'
miRNA:   3'- guCGGCGGCGcCgGGCAGCGGCau---CG- -5'
10711 5' -64 NC_002794.1 + 12187 0.76 0.163733
Target:  5'- -cGCCGCCGCGGCCgGgCGCCGc--- -3'
miRNA:   3'- guCGGCGGCGCCGGgCaGCGGCaucg -5'
10711 5' -64 NC_002794.1 + 12218 0.68 0.487089
Target:  5'- cCGGCgGCgucgGCGGCgCCGgcggCGCCGUccgcGGCg -3'
miRNA:   3'- -GUCGgCGg---CGCCG-GGCa---GCGGCA----UCG- -5'
10711 5' -64 NC_002794.1 + 13132 0.7 0.418997
Target:  5'- gCGGCuCGCucgCGCGGgUCGUCGCCGUcccauGCc -3'
miRNA:   3'- -GUCG-GCG---GCGCCgGGCAGCGGCAu----CG- -5'
10711 5' -64 NC_002794.1 + 13865 0.7 0.418997
Target:  5'- -cGCCGCCGCGaCCCGguUCuCCG-AGCg -3'
miRNA:   3'- guCGGCGGCGCcGGGC--AGcGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 14143 0.68 0.513954
Target:  5'- --aCCGUC-CGGUCCGUCGUCG-AGCc -3'
miRNA:   3'- gucGGCGGcGCCGGGCAGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 14495 0.74 0.242249
Target:  5'- -cGCgGCgGCGGCCCGcgcucgcggCGCuCGUGGCg -3'
miRNA:   3'- guCGgCGgCGCCGGGCa--------GCG-GCAUCG- -5'
10711 5' -64 NC_002794.1 + 14577 0.67 0.58814
Target:  5'- cCGGCCGaCCgaaGCGGgCCGUggcgagcgCGCCG-GGCa -3'
miRNA:   3'- -GUCGGC-GG---CGCCgGGCA--------GCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 14773 0.67 0.541405
Target:  5'- aGGCCGCUGaGGCCggCGagGCCGgcGUg -3'
miRNA:   3'- gUCGGCGGCgCCGG--GCagCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 14870 0.68 0.532196
Target:  5'- cCAGCCGCC-CGGU---UCGCCGcgAGCc -3'
miRNA:   3'- -GUCGGCGGcGCCGggcAGCGGCa-UCG- -5'
10711 5' -64 NC_002794.1 + 16479 0.67 0.557177
Target:  5'- cCAGcCCGCCGCcGCcuccgccgccaccgCCGcCGCCGUccccGGCg -3'
miRNA:   3'- -GUC-GGCGGCGcCG--------------GGCaGCGGCA----UCG- -5'
10711 5' -64 NC_002794.1 + 16569 0.69 0.435487
Target:  5'- -cGCCGCCGCcGCcaccaccgCCGcCGCCGUcuccGGCg -3'
miRNA:   3'- guCGGCGGCGcCG--------GGCaGCGGCA----UCG- -5'
10711 5' -64 NC_002794.1 + 16813 0.68 0.523045
Target:  5'- cCAGCCGCC----CCCGcCGCCGcAGCa -3'
miRNA:   3'- -GUCGGCGGcgccGGGCaGCGGCaUCG- -5'
10711 5' -64 NC_002794.1 + 16875 0.75 0.216347
Target:  5'- -cGCCGCCGCGGCagcaaccaCCGcCGCCGcgacAGCc -3'
miRNA:   3'- guCGGCGGCGCCG--------GGCaGCGGCa---UCG- -5'
10711 5' -64 NC_002794.1 + 16919 0.68 0.532196
Target:  5'- gAGCCGCCGa---CUGUCGUCGgcGCc -3'
miRNA:   3'- gUCGGCGGCgccgGGCAGCGGCauCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.