miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10711 5' -64 NC_002794.1 + 194816 0.7 0.394204
Target:  5'- cCAGCCGCagcgacgcgcgcuCGCGGCCCGgCGUCuccAGCc -3'
miRNA:   3'- -GUCGGCG-------------GCGCCGGGCaGCGGca-UCG- -5'
10711 5' -64 NC_002794.1 + 194505 0.71 0.342548
Target:  5'- -cGCCcggcCCGCGGCCCGcgugcCGCCGgcccAGCa -3'
miRNA:   3'- guCGGc---GGCGCCGGGCa----GCGGCa---UCG- -5'
10711 5' -64 NC_002794.1 + 194142 0.67 0.541405
Target:  5'- gCGGCCGCagcagcgccCGCGaGCCC--UGCCGgcGCg -3'
miRNA:   3'- -GUCGGCG---------GCGC-CGGGcaGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 194018 0.73 0.269496
Target:  5'- gCGGCCGCCGCcgccggcgccucGCCCGcCGCCGccGCc -3'
miRNA:   3'- -GUCGGCGGCGc-----------CGGGCaGCGGCauCG- -5'
10711 5' -64 NC_002794.1 + 193979 0.67 0.559975
Target:  5'- --aCCGCCGCGGCcgcuaCCGcCGCCcccGGCu -3'
miRNA:   3'- gucGGCGGCGCCG-----GGCaGCGGca-UCG- -5'
10711 5' -64 NC_002794.1 + 193738 0.66 0.645055
Target:  5'- -cGCCGcCCGCGGCU--UCGgCG-AGCg -3'
miRNA:   3'- guCGGC-GGCGCCGGgcAGCgGCaUCG- -5'
10711 5' -64 NC_002794.1 + 193584 0.67 0.578717
Target:  5'- -cGCCgGUgGCGGCucaCCGUCG-UGUAGCg -3'
miRNA:   3'- guCGG-CGgCGCCG---GGCAGCgGCAUCG- -5'
10711 5' -64 NC_002794.1 + 193417 0.8 0.098722
Target:  5'- -cGCCGCCGCcGCCCGUCguccaGCCGUccGGCa -3'
miRNA:   3'- guCGGCGGCGcCGGGCAG-----CGGCA--UCG- -5'
10711 5' -64 NC_002794.1 + 193219 0.66 0.616552
Target:  5'- aCAGCaCGCUuC-GCUCGUgGUCGUAGCa -3'
miRNA:   3'- -GUCG-GCGGcGcCGGGCAgCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 193058 0.67 0.540481
Target:  5'- -cGCCcgcaccgGCUGCGGgCCGUCGCgGgacAGCc -3'
miRNA:   3'- guCGG-------CGGCGCCgGGCAGCGgCa--UCG- -5'
10711 5' -64 NC_002794.1 + 192653 0.69 0.435487
Target:  5'- -cGCCGCCGCGcGCUCG-CGCgacuCGaAGCg -3'
miRNA:   3'- guCGGCGGCGC-CGGGCaGCG----GCaUCG- -5'
10711 5' -64 NC_002794.1 + 192525 0.66 0.626051
Target:  5'- cCGGuuGCCGCGcGUCagccaGUuaaagugccCGUCGUAGCg -3'
miRNA:   3'- -GUCggCGGCGC-CGGg----CA---------GCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 192014 0.71 0.349723
Target:  5'- gCGGUgGCCGCGGCugCUGUUuCUGUGGCg -3'
miRNA:   3'- -GUCGgCGGCGCCG--GGCAGcGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 191654 0.66 0.635554
Target:  5'- gCAGcCCGCCGgGGgaCGgCGCCGgcAGCg -3'
miRNA:   3'- -GUC-GGCGGCgCCggGCaGCGGCa-UCG- -5'
10711 5' -64 NC_002794.1 + 190724 0.7 0.427195
Target:  5'- cCAGCCGgagaCGCaGcGCCCGcCGCCGUcucgacgggGGCg -3'
miRNA:   3'- -GUCGGCg---GCG-C-CGGGCaGCGGCA---------UCG- -5'
10711 5' -64 NC_002794.1 + 190619 0.75 0.206668
Target:  5'- aCAGCCGCa--GGUUCGacUCGCCGUAGCc -3'
miRNA:   3'- -GUCGGCGgcgCCGGGC--AGCGGCAUCG- -5'
10711 5' -64 NC_002794.1 + 190546 0.73 0.270684
Target:  5'- cCAGCgGuCCGC-GUCCGUCGCCGacAGCa -3'
miRNA:   3'- -GUCGgC-GGCGcCGGGCAGCGGCa-UCG- -5'
10711 5' -64 NC_002794.1 + 190122 0.68 0.513954
Target:  5'- -cGCCGaaGCGGUCCGcgCGCCGa--- -3'
miRNA:   3'- guCGGCggCGCCGGGCa-GCGGCaucg -5'
10711 5' -64 NC_002794.1 + 189990 0.67 0.546955
Target:  5'- aCGGuCCGuCCGgguccauCGGCCCGUCcggguccaucggcgGCCgGUAGCg -3'
miRNA:   3'- -GUC-GGC-GGC-------GCCGGGCAG--------------CGG-CAUCG- -5'
10711 5' -64 NC_002794.1 + 189910 0.73 0.282788
Target:  5'- -cGCCGCCGCGcgaccGCCCGcUCGCCcgacGGCc -3'
miRNA:   3'- guCGGCGGCGC-----CGGGC-AGCGGca--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.