Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 30535 | 0.66 | 0.978815 |
Target: 5'- uGGCAcaGCACGACaccgcCGCGCACa---- -3' miRNA: 3'- uUCGU--UGUGCUGau---GCGCGUGcaaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 18699 | 0.66 | 0.970518 |
Target: 5'- -cGCGGaucuCGCGACgucaaugucgACGCGUACGUUGa -3' miRNA: 3'- uuCGUU----GUGCUGa---------UGCGCGUGCAAUa -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 112276 | 0.66 | 0.970518 |
Target: 5'- uAGCAACACaGCUACGCcaGC-CGUUu- -3' miRNA: 3'- uUCGUUGUGcUGAUGCG--CGuGCAAua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 13062 | 0.66 | 0.967295 |
Target: 5'- cAGCAACAUGACUcaACuaGCugGUc-- -3' miRNA: 3'- uUCGUUGUGCUGA--UGcgCGugCAaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 81630 | 0.67 | 0.963831 |
Target: 5'- uGGCGGCgAUGAaggACGUGCACGUg-- -3' miRNA: 3'- uUCGUUG-UGCUga-UGCGCGUGCAaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 56648 | 0.67 | 0.961258 |
Target: 5'- cGGCGGCaguuauuaccauuACGugUugaacgaaaaaaaucGCGCGCGCGUUGUc -3' miRNA: 3'- uUCGUUG-------------UGCugA---------------UGCGCGUGCAAUA- -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 104939 | 0.67 | 0.960118 |
Target: 5'- cAGGCGauACAUGACcggcgGCGCGUAUGUUu- -3' miRNA: 3'- -UUCGU--UGUGCUGa----UGCGCGUGCAAua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 28102 | 0.67 | 0.960118 |
Target: 5'- -cGUGACGCGGCccgaauugaGCGCGCACGa--- -3' miRNA: 3'- uuCGUUGUGCUGa--------UGCGCGUGCaaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 28341 | 0.67 | 0.95615 |
Target: 5'- gGGGCAauGCACGcGCgcggACGCGgcCACGUUGUg -3' miRNA: 3'- -UUCGU--UGUGC-UGa---UGCGC--GUGCAAUA- -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 43350 | 0.67 | 0.951922 |
Target: 5'- -uGCGAauuguaaugucCACGACUACGUGUACGc--- -3' miRNA: 3'- uuCGUU-----------GUGCUGAUGCGCGUGCaaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 43925 | 0.67 | 0.951922 |
Target: 5'- aGAGCAGCGCGgucguuagacGCUGCGcCGCaaaGCGUg-- -3' miRNA: 3'- -UUCGUUGUGC----------UGAUGC-GCG---UGCAaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 88191 | 0.67 | 0.951485 |
Target: 5'- cGGGCGACAUGACUA-GCGguacccaaauagaCGCGUUGa -3' miRNA: 3'- -UUCGUUGUGCUGAUgCGC-------------GUGCAAUa -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 113625 | 0.67 | 0.951044 |
Target: 5'- uGAGCAAuugguuaucgcucuuCACcauauuaaucucguGCUGCGCGCGCGUUGUg -3' miRNA: 3'- -UUCGUU---------------GUGc-------------UGAUGCGCGUGCAAUA- -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 71306 | 0.68 | 0.937633 |
Target: 5'- cAGCAACgauuuugcguACGAuuaCUACGUGCGCGUg-- -3' miRNA: 3'- uUCGUUG----------UGCU---GAUGCGCGUGCAaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 25494 | 0.68 | 0.920881 |
Target: 5'- aAAGUaAACACGcCUuggGCGCGCACGUc-- -3' miRNA: 3'- -UUCG-UUGUGCuGA---UGCGCGUGCAaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 87775 | 0.7 | 0.880021 |
Target: 5'- uGGCAACGaGAUcAUGUGCACGUUAa -3' miRNA: 3'- uUCGUUGUgCUGaUGCGCGUGCAAUa -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 109692 | 0.7 | 0.864317 |
Target: 5'- -cGCAACGCcaauGGCUACGUGCAUGcUAa -3' miRNA: 3'- uuCGUUGUG----CUGAUGCGCGUGCaAUa -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 8430 | 0.7 | 0.864317 |
Target: 5'- -uGCAACACG---GCGCGUugGUUAa -3' miRNA: 3'- uuCGUUGUGCugaUGCGCGugCAAUa -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 47288 | 0.71 | 0.820976 |
Target: 5'- gAAGCGuuuaGCGACUAcgcucCGCGCACGUa-- -3' miRNA: 3'- -UUCGUug--UGCUGAU-----GCGCGUGCAaua -5' |
|||||||
11300 | 3' | -50.9 | NC_003083.1 | + | 42048 | 0.72 | 0.791549 |
Target: 5'- cAGCGGCAUGAUUGucaccacUGCGCACGUUu- -3' miRNA: 3'- uUCGUUGUGCUGAU-------GCGCGUGCAAua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home