miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13460 3' -42.2 NC_003409.1 + 121424 1.07 0.060773
Target:  5'- gUGUCACAUUCUGUGACCGCGAc -3'
miRNA:   3'- -ACAGUGUAAGACACUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 93341 0.76 0.979321
Target:  5'- -uUCGC--UCUGUGACCGUGAu -3'
miRNA:   3'- acAGUGuaAGACACUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 113237 0.75 0.987818
Target:  5'- cGUCGCGg--UGUGGCUGCGAc -3'
miRNA:   3'- aCAGUGUaagACACUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 116367 0.72 0.998744
Target:  5'- gGUCGCAg--UG-GACCGCGAg -3'
miRNA:   3'- aCAGUGUaagACaCUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 63518 0.72 0.998989
Target:  5'- gGUC-CAUUCacguaUGUGAUCGCGGa -3'
miRNA:   3'- aCAGuGUAAG-----ACACUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 32264 0.71 0.999605
Target:  5'- uUGUUAUuggaagggGUUCUGUGACUGgGAg -3'
miRNA:   3'- -ACAGUG--------UAAGACACUGGCgCU- -5'
13460 3' -42.2 NC_003409.1 + 60848 0.7 0.999765
Target:  5'- gUGcCACGUUCcgGUGgacGCCGCGGg -3'
miRNA:   3'- -ACaGUGUAAGa-CAC---UGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 15486 0.7 0.999821
Target:  5'- -cUCACAgUCUGgauaGACUGCGAa -3'
miRNA:   3'- acAGUGUaAGACa---CUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 73617 0.7 0.999821
Target:  5'- --cCAUAUUCUGUGA-CGCGGc -3'
miRNA:   3'- acaGUGUAAGACACUgGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 123499 0.68 0.999987
Target:  5'- cUGUCAgGUUCucccaucgacgacgcUG-GGCCGCGAg -3'
miRNA:   3'- -ACAGUgUAAG---------------ACaCUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 121624 0.68 0.99999
Target:  5'- -aUCACAUUCUGagGACgGCa- -3'
miRNA:   3'- acAGUGUAAGACa-CUGgCGcu -5'
13460 3' -42.2 NC_003409.1 + 46884 0.68 0.999995
Target:  5'- cGUCaaGCAUaacUCUGUGGCUgGCGGc -3'
miRNA:   3'- aCAG--UGUA---AGACACUGG-CGCU- -5'
13460 3' -42.2 NC_003409.1 + 25656 0.68 0.999995
Target:  5'- cGUCACAUaucUCUGUGcACCcaaGUGGu -3'
miRNA:   3'- aCAGUGUA---AGACAC-UGG---CGCU- -5'
13460 3' -42.2 NC_003409.1 + 8415 0.68 0.999995
Target:  5'- cGUCACAUUUggagGACUGgGAa -3'
miRNA:   3'- aCAGUGUAAGaca-CUGGCgCU- -5'
13460 3' -42.2 NC_003409.1 + 5264 0.67 0.999998
Target:  5'- aGUcCAUGUUCUGUGACCu--- -3'
miRNA:   3'- aCA-GUGUAAGACACUGGcgcu -5'
13460 3' -42.2 NC_003409.1 + 75412 0.67 0.999998
Target:  5'- aGUCACAUUCUccca-CGCGAa -3'
miRNA:   3'- aCAGUGUAAGAcacugGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 41544 0.67 0.999998
Target:  5'- aGUcCGCGcgUCcGUGGCCGCGu -3'
miRNA:   3'- aCA-GUGUa-AGaCACUGGCGCu -5'
13460 3' -42.2 NC_003409.1 + 134565 0.67 0.999999
Target:  5'- ---gACAacCUGUGACUGCGAc -3'
miRNA:   3'- acagUGUaaGACACUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 9214 0.67 0.999999
Target:  5'- cUGUCAagcccCUGUaGACCGUGAc -3'
miRNA:   3'- -ACAGUguaa-GACA-CUGGCGCU- -5'
13460 3' -42.2 NC_003409.1 + 50390 0.66 1
Target:  5'- aGUUACGUg-UGUGcggaccACCGCGAa -3'
miRNA:   3'- aCAGUGUAagACAC------UGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.