miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15664 5' -53.5 NC_004065.1 + 1551 0.71 0.878545
Target:  5'- gCGACGUGGUguguaaGCUGACGGCGuGCCugcGAg -3'
miRNA:   3'- -GUUGUAUCG------UGGCUGUCGCuCGGu--CU- -5'
15664 5' -53.5 NC_004065.1 + 20719 0.7 0.88347
Target:  5'- aCGAC--GGCACCGACGGCGAcgacggcgaucacgGCgAGGg -3'
miRNA:   3'- -GUUGuaUCGUGGCUGUCGCU--------------CGgUCU- -5'
15664 5' -53.5 NC_004065.1 + 70101 0.7 0.885548
Target:  5'- gCGACGagcAGCACCGGCAGCGGcggcggcggcGCCGa- -3'
miRNA:   3'- -GUUGUa--UCGUGGCUGUCGCU----------CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 72925 0.7 0.885548
Target:  5'- -----aGGCGCCcccGGCGGCGAGUCGGGu -3'
miRNA:   3'- guuguaUCGUGG---CUGUCGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 68578 0.7 0.892326
Target:  5'- gAGCAacGCGgCGGCGGCGAuCCAGAg -3'
miRNA:   3'- gUUGUauCGUgGCUGUCGCUcGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 182319 0.7 0.892326
Target:  5'- ---uGUAGCACCGGCGgagcuuGCGAGCUcGAu -3'
miRNA:   3'- guugUAUCGUGGCUGU------CGCUCGGuCU- -5'
15664 5' -53.5 NC_004065.1 + 78580 0.7 0.898877
Target:  5'- gCGACAgUGGCAacagCGACGGCGGG-CAGAa -3'
miRNA:   3'- -GUUGU-AUCGUg---GCUGUCGCUCgGUCU- -5'
15664 5' -53.5 NC_004065.1 + 65690 0.7 0.898877
Target:  5'- gGACAUcGCGCgGGCGuGCGAGCUGGu -3'
miRNA:   3'- gUUGUAuCGUGgCUGU-CGCUCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 166143 0.7 0.898877
Target:  5'- aGACGUcGGCGCCGgcgGCAGCGGcGCCGa- -3'
miRNA:   3'- gUUGUA-UCGUGGC---UGUCGCU-CGGUcu -5'
15664 5' -53.5 NC_004065.1 + 213577 0.7 0.905198
Target:  5'- gAACGUGGUACCGGgcucgcUAGUGGGCuCGGGc -3'
miRNA:   3'- gUUGUAUCGUGGCU------GUCGCUCG-GUCU- -5'
15664 5' -53.5 NC_004065.1 + 66397 0.7 0.905198
Target:  5'- cCAGC-UGGCGCCGGuccgcggccCAGCGcGCCAGc -3'
miRNA:   3'- -GUUGuAUCGUGGCU---------GUCGCuCGGUCu -5'
15664 5' -53.5 NC_004065.1 + 222905 0.7 0.905198
Target:  5'- gGACGUggGGCGCUGAC-GCGGGCCc-- -3'
miRNA:   3'- gUUGUA--UCGUGGCUGuCGCUCGGucu -5'
15664 5' -53.5 NC_004065.1 + 197249 0.7 0.905198
Target:  5'- gAGCggGUGGCguGCCGAUAGgGuGCCGGAu -3'
miRNA:   3'- gUUG--UAUCG--UGGCUGUCgCuCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 225902 0.7 0.911285
Target:  5'- gCGAC--GGCGgCGGCGG-GAGCCGGAg -3'
miRNA:   3'- -GUUGuaUCGUgGCUGUCgCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 99734 0.69 0.917136
Target:  5'- -cGCAU-GCGCCGACAGCGAcGgCAa- -3'
miRNA:   3'- guUGUAuCGUGGCUGUCGCU-CgGUcu -5'
15664 5' -53.5 NC_004065.1 + 201630 0.69 0.917136
Target:  5'- uCGACGUGGCACCcccCGGCGAGgCgCAGc -3'
miRNA:   3'- -GUUGUAUCGUGGcu-GUCGCUC-G-GUCu -5'
15664 5' -53.5 NC_004065.1 + 29978 0.69 0.922749
Target:  5'- gCGGCGgcGGCGgCGGCAGUGGuaucGCCAGAg -3'
miRNA:   3'- -GUUGUa-UCGUgGCUGUCGCU----CGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 112862 0.69 0.928125
Target:  5'- gGACAgcAGCucguCCGGCAGacucaGGGCCAGGc -3'
miRNA:   3'- gUUGUa-UCGu---GGCUGUCg----CUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 44837 0.69 0.928125
Target:  5'- gCGACAcGGaCAgCGACA-CGGGCCGGAg -3'
miRNA:   3'- -GUUGUaUC-GUgGCUGUcGCUCGGUCU- -5'
15664 5' -53.5 NC_004065.1 + 67673 0.69 0.928125
Target:  5'- gAGCGgcGGCGgCGGCGGCGGGCCc-- -3'
miRNA:   3'- gUUGUa-UCGUgGCUGUCGCUCGGucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.