Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15678 | 3' | -56.7 | NC_004065.1 | + | 226634 | 0.66 | 0.934124 |
Target: 5'- gCGCuCUCCGaGuGGCUCgaggCGAG-GUGUCa -3' miRNA: 3'- -GCG-GAGGC-CuUCGAGa---GCUCuCGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 19197 | 0.66 | 0.934124 |
Target: 5'- -aCCUCCGGccGCUCUgCGcGAGCcggugGUCg -3' miRNA: 3'- gcGGAGGCCuuCGAGA-GCuCUCG-----UAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 195291 | 0.66 | 0.929164 |
Target: 5'- gGCCaggUGGAAGCUCUUGaAGucgcGCAUCg -3' miRNA: 3'- gCGGag-GCCUUCGAGAGC-UCu---CGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 198274 | 0.66 | 0.938858 |
Target: 5'- gCGCCgCaaGGAGCgUCUgGAGAGCAUg -3' miRNA: 3'- -GCGGaGgcCUUCG-AGAgCUCUCGUAg -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 119307 | 0.66 | 0.923979 |
Target: 5'- gGUCUUCGGGucgaggguggcGGCUCUCGcccuGGGCAg- -3' miRNA: 3'- gCGGAGGCCU-----------UCGAGAGCu---CUCGUag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 125506 | 0.66 | 0.938858 |
Target: 5'- aCGgCgacCCGGcGGC-CUCGAGAcggGCAUCg -3' miRNA: 3'- -GCgGa--GGCCuUCGaGAGCUCU---CGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 45139 | 0.66 | 0.938858 |
Target: 5'- uGCCUCCGcGAAcggaggcguccuGCUCgagCGAGAGgCGa- -3' miRNA: 3'- gCGGAGGC-CUU------------CGAGa--GCUCUC-GUag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 224452 | 0.67 | 0.894684 |
Target: 5'- uCGCCcgggCCGGGcAGCUCaacCGGGAGCu-- -3' miRNA: 3'- -GCGGa---GGCCU-UCGAGa--GCUCUCGuag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 165662 | 0.67 | 0.900987 |
Target: 5'- aGCCUgCGGAcGCgaUC-CGAGAGgAUCu -3' miRNA: 3'- gCGGAgGCCUuCG--AGaGCUCUCgUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 198395 | 0.67 | 0.912931 |
Target: 5'- aGCCUgCUGGu-GUaCUCGAGAGCGg- -3' miRNA: 3'- gCGGA-GGCCuuCGaGAGCUCUCGUag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 169589 | 0.67 | 0.912931 |
Target: 5'- gCGgCUCCGGccGGUUCgCGGGGGcCGUCa -3' miRNA: 3'- -GCgGAGGCCu-UCGAGaGCUCUC-GUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 110103 | 0.67 | 0.888164 |
Target: 5'- -uCCUCUGGAAaCUCcucaacucCGAGAGCGUCu -3' miRNA: 3'- gcGGAGGCCUUcGAGa-------GCUCUCGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 64873 | 0.67 | 0.918567 |
Target: 5'- gGCCuUCUGGAAGUccgUCUCuAGGGCGg- -3' miRNA: 3'- gCGG-AGGCCUUCG---AGAGcUCUCGUag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 18168 | 0.67 | 0.8875 |
Target: 5'- uGCCccgauaUCCaGGAGGCgacagucUCUCGAcGGGCGUCc -3' miRNA: 3'- gCGG------AGG-CCUUCG-------AGAGCU-CUCGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 130594 | 0.67 | 0.8875 |
Target: 5'- aGCgUCCGGugacaaagagcgaGAGCUCcCGGGAGCu-- -3' miRNA: 3'- gCGgAGGCC-------------UUCGAGaGCUCUCGuag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 176345 | 0.67 | 0.912931 |
Target: 5'- cCGCUUgCGGcGGCuUCUCGAG-GCAg- -3' miRNA: 3'- -GCGGAgGCCuUCG-AGAGCUCuCGUag -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 147253 | 0.68 | 0.874488 |
Target: 5'- gCGCCaCCGGAcgccuGCUCUCcGAGGcCGUCu -3' miRNA: 3'- -GCGGaGGCCUu----CGAGAG-CUCUcGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 131286 | 0.68 | 0.874488 |
Target: 5'- -cCCUCCGGggGUUggUGAGcgacGGCGUCa -3' miRNA: 3'- gcGGAGGCCuuCGAgaGCUC----UCGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 115399 | 0.68 | 0.881431 |
Target: 5'- cCGCCggCCGGcGGUUC-CGAGGcCAUCa -3' miRNA: 3'- -GCGGa-GGCCuUCGAGaGCUCUcGUAG- -5' |
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15678 | 3' | -56.7 | NC_004065.1 | + | 74406 | 0.68 | 0.881431 |
Target: 5'- cCGCCUgCGG-GGUUCUCGGcccGGGCAc- -3' miRNA: 3'- -GCGGAgGCCuUCGAGAGCU---CUCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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