miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15678 3' -56.7 NC_004065.1 + 147253 0.68 0.874488
Target:  5'- gCGCCaCCGGAcgccuGCUCUCcGAGGcCGUCu -3'
miRNA:   3'- -GCGGaGGCCUu----CGAGAG-CUCUcGUAG- -5'
15678 3' -56.7 NC_004065.1 + 131286 0.68 0.874488
Target:  5'- -cCCUCCGGggGUUggUGAGcgacGGCGUCa -3'
miRNA:   3'- gcGGAGGCCuuCGAgaGCUC----UCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 209961 0.68 0.859993
Target:  5'- gGCCcgaCGGGcGGCUCgagCGAGAGCAc- -3'
miRNA:   3'- gCGGag-GCCU-UCGAGa--GCUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 151728 0.68 0.844721
Target:  5'- aCGCagUCC-GAGGCcCUCGAGAGCcgCu -3'
miRNA:   3'- -GCGg-AGGcCUUCGaGAGCUCUCGuaG- -5'
15678 3' -56.7 NC_004065.1 + 109670 0.69 0.820461
Target:  5'- gGuCCUCCGGgcGCUCUcCGAcGA-CAUCg -3'
miRNA:   3'- gC-GGAGGCCuuCGAGA-GCU-CUcGUAG- -5'
15678 3' -56.7 NC_004065.1 + 227062 0.69 0.803466
Target:  5'- uCGCUUUCccaGGAggucuuGGCUCUCGAGAGCc-- -3'
miRNA:   3'- -GCGGAGG---CCU------UCGAGAGCUCUCGuag -5'
15678 3' -56.7 NC_004065.1 + 152909 0.69 0.836808
Target:  5'- uCGCCgCCGuuGGCUC-CGAugacGAGCGUCg -3'
miRNA:   3'- -GCGGaGGCcuUCGAGaGCU----CUCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 113991 0.69 0.820461
Target:  5'- gGCCUCCucgccGGAGUUCUCcGAGgugucGGCGUCg -3'
miRNA:   3'- gCGGAGGc----CUUCGAGAG-CUC-----UCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 202597 0.69 0.815428
Target:  5'- gGCCUggaggCCGGAGGCUCUgauccgcccggcggaCcGAGAGCAg- -3'
miRNA:   3'- gCGGA-----GGCCUUCGAGA---------------G-CUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 24912 0.7 0.749224
Target:  5'- aGCUUCCGGAGGCgccauaUCGAGcgaucgacAGCGUUu -3'
miRNA:   3'- gCGGAGGCCUUCGag----AGCUC--------UCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 162528 0.7 0.774175
Target:  5'- aGCCgCCGGGccaggucucggacgGGCUCUCGAGAcucgaucucguGCAUg -3'
miRNA:   3'- gCGGaGGCCU--------------UCGAGAGCUCU-----------CGUAg -5'
15678 3' -56.7 NC_004065.1 + 135671 0.7 0.785886
Target:  5'- gCGCgUCgGGggGCUCgCGcAGAGguUCu -3'
miRNA:   3'- -GCGgAGgCCuuCGAGaGC-UCUCguAG- -5'
15678 3' -56.7 NC_004065.1 + 110141 0.7 0.785886
Target:  5'- gGCCgcgCCGGcAAGUUCUCGcucAGGGaCGUCu -3'
miRNA:   3'- gCGGa--GGCC-UUCGAGAGC---UCUC-GUAG- -5'
15678 3' -56.7 NC_004065.1 + 34115 0.71 0.720676
Target:  5'- cCGCCaUCUGGggGCUCcUCaGGGAG-AUCg -3'
miRNA:   3'- -GCGG-AGGCCuuCGAG-AG-CUCUCgUAG- -5'
15678 3' -56.7 NC_004065.1 + 227336 0.73 0.622099
Target:  5'- gGCa-CCGGGcucGGCUCUCGAGAGCc-- -3'
miRNA:   3'- gCGgaGGCCU---UCGAGAGCUCUCGuag -5'
15678 3' -56.7 NC_004065.1 + 130318 0.73 0.632049
Target:  5'- cCGCCUUCGucAGCUCcCGGGAGCucUCg -3'
miRNA:   3'- -GCGGAGGCcuUCGAGaGCUCUCGu-AG- -5'
15678 3' -56.7 NC_004065.1 + 75666 0.74 0.533667
Target:  5'- gGUCaUCCGuGAGCUCuUCGGGGGCGUCu -3'
miRNA:   3'- gCGG-AGGCcUUCGAG-AGCUCUCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 72222 0.74 0.56279
Target:  5'- uCGCCUCCGGGcugcccGGCUCcacCGGcGGCGUCg -3'
miRNA:   3'- -GCGGAGGCCU------UCGAGa--GCUcUCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 37558 0.75 0.505099
Target:  5'- uGCCgaCCGGggGCUCUUGAG-GCcgCc -3'
miRNA:   3'- gCGGa-GGCCuuCGAGAGCUCuCGuaG- -5'
15678 3' -56.7 NC_004065.1 + 19342 0.75 0.477209
Target:  5'- aCGCUacaUCgCGGAGGuCUCUCGGGAgGCGUCu -3'
miRNA:   3'- -GCGG---AG-GCCUUC-GAGAGCUCU-CGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.