miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15678 3' -56.7 NC_004065.1 + 125506 0.66 0.938858
Target:  5'- aCGgCgacCCGGcGGC-CUCGAGAcggGCAUCg -3'
miRNA:   3'- -GCgGa--GGCCuUCGaGAGCUCU---CGUAG- -5'
15678 3' -56.7 NC_004065.1 + 130318 0.73 0.632049
Target:  5'- cCGCCUUCGucAGCUCcCGGGAGCucUCg -3'
miRNA:   3'- -GCGGAGGCcuUCGAGaGCUCUCGu-AG- -5'
15678 3' -56.7 NC_004065.1 + 130594 0.67 0.8875
Target:  5'- aGCgUCCGGugacaaagagcgaGAGCUCcCGGGAGCu-- -3'
miRNA:   3'- gCGgAGGCC-------------UUCGAGaGCUCUCGuag -5'
15678 3' -56.7 NC_004065.1 + 131286 0.68 0.874488
Target:  5'- -cCCUCCGGggGUUggUGAGcgacGGCGUCa -3'
miRNA:   3'- gcGGAGGCCuuCGAgaGCUC----UCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 135671 0.7 0.785886
Target:  5'- gCGCgUCgGGggGCUCgCGcAGAGguUCu -3'
miRNA:   3'- -GCGgAGgCCuuCGAGaGC-UCUCguAG- -5'
15678 3' -56.7 NC_004065.1 + 147253 0.68 0.874488
Target:  5'- gCGCCaCCGGAcgccuGCUCUCcGAGGcCGUCu -3'
miRNA:   3'- -GCGGaGGCCUu----CGAGAG-CUCUcGUAG- -5'
15678 3' -56.7 NC_004065.1 + 151728 0.68 0.844721
Target:  5'- aCGCagUCC-GAGGCcCUCGAGAGCcgCu -3'
miRNA:   3'- -GCGg-AGGcCUUCGaGAGCUCUCGuaG- -5'
15678 3' -56.7 NC_004065.1 + 152001 0.68 0.859993
Target:  5'- uGCgUgCGGuggucguagcGGCUCUCGAGGGCcUCg -3'
miRNA:   3'- gCGgAgGCCu---------UCGAGAGCUCUCGuAG- -5'
15678 3' -56.7 NC_004065.1 + 152909 0.69 0.836808
Target:  5'- uCGCCgCCGuuGGCUC-CGAugacGAGCGUCg -3'
miRNA:   3'- -GCGGaGGCcuUCGAGaGCU----CUCGUAG- -5'
15678 3' -56.7 NC_004065.1 + 162528 0.7 0.774175
Target:  5'- aGCCgCCGGGccaggucucggacgGGCUCUCGAGAcucgaucucguGCAUg -3'
miRNA:   3'- gCGGaGGCCU--------------UCGAGAGCUCU-----------CGUAg -5'
15678 3' -56.7 NC_004065.1 + 165662 0.67 0.900987
Target:  5'- aGCCUgCGGAcGCgaUC-CGAGAGgAUCu -3'
miRNA:   3'- gCGGAgGCCUuCG--AGaGCUCUCgUAG- -5'
15678 3' -56.7 NC_004065.1 + 169589 0.67 0.912931
Target:  5'- gCGgCUCCGGccGGUUCgCGGGGGcCGUCa -3'
miRNA:   3'- -GCgGAGGCCu-UCGAGaGCUCUC-GUAG- -5'
15678 3' -56.7 NC_004065.1 + 176345 0.67 0.912931
Target:  5'- cCGCUUgCGGcGGCuUCUCGAG-GCAg- -3'
miRNA:   3'- -GCGGAgGCCuUCG-AGAGCUCuCGUag -5'
15678 3' -56.7 NC_004065.1 + 195291 0.66 0.929164
Target:  5'- gGCCaggUGGAAGCUCUUGaAGucgcGCAUCg -3'
miRNA:   3'- gCGGag-GCCUUCGAGAGC-UCu---CGUAG- -5'
15678 3' -56.7 NC_004065.1 + 198274 0.66 0.938858
Target:  5'- gCGCCgCaaGGAGCgUCUgGAGAGCAUg -3'
miRNA:   3'- -GCGGaGgcCUUCG-AGAgCUCUCGUAg -5'
15678 3' -56.7 NC_004065.1 + 198395 0.67 0.912931
Target:  5'- aGCCUgCUGGu-GUaCUCGAGAGCGg- -3'
miRNA:   3'- gCGGA-GGCCuuCGaGAGCUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 202597 0.69 0.815428
Target:  5'- gGCCUggaggCCGGAGGCUCUgauccgcccggcggaCcGAGAGCAg- -3'
miRNA:   3'- gCGGA-----GGCCUUCGAGA---------------G-CUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 209961 0.68 0.859993
Target:  5'- gGCCcgaCGGGcGGCUCgagCGAGAGCAc- -3'
miRNA:   3'- gCGGag-GCCU-UCGAGa--GCUCUCGUag -5'
15678 3' -56.7 NC_004065.1 + 224452 0.67 0.894684
Target:  5'- uCGCCcgggCCGGGcAGCUCaacCGGGAGCu-- -3'
miRNA:   3'- -GCGGa---GGCCU-UCGAGa--GCUCUCGuag -5'
15678 3' -56.7 NC_004065.1 + 226634 0.66 0.934124
Target:  5'- gCGCuCUCCGaGuGGCUCgaggCGAG-GUGUCa -3'
miRNA:   3'- -GCG-GAGGC-CuUCGAGa---GCUCuCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.