miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 42726 0.73 0.32268
Target:  5'- cGUCACCGAUcgCGAGCAGgCGaaggaCAUCg -3'
miRNA:   3'- cCAGUGGCUA--GCUCGUCgGCg----GUAGg -5'
16253 3' -56.4 NC_004084.1 + 5560 0.71 0.397748
Target:  5'- cGG-CACCGcUCGAGCAGaUCGUCAacugCCg -3'
miRNA:   3'- -CCaGUGGCuAGCUCGUC-GGCGGUa---GG- -5'
16253 3' -56.4 NC_004084.1 + 55991 0.7 0.434523
Target:  5'- -aUCGCCGAUggCGAGCaucgcuggcgAGCCGCCAa-- -3'
miRNA:   3'- ccAGUGGCUA--GCUCG----------UCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 49188 0.7 0.483131
Target:  5'- uGGaCGCCcuGAUCGAGCAG--GUCAUCCa -3'
miRNA:   3'- -CCaGUGG--CUAGCUCGUCggCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 23837 0.69 0.513519
Target:  5'- cGUCG-CGAUgGAgGCAGUCGCCG-CCa -3'
miRNA:   3'- cCAGUgGCUAgCU-CGUCGGCGGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 33738 0.69 0.513519
Target:  5'- -uUCGCCag-CGAGCGGCagCGCUGUCCc -3'
miRNA:   3'- ccAGUGGcuaGCUCGUCG--GCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 39077 0.67 0.638659
Target:  5'- aGGUCGCUGucgcgcuugagUGAGaCAGUCGCCcgUCg -3'
miRNA:   3'- -CCAGUGGCua---------GCUC-GUCGGCGGuaGG- -5'
16253 3' -56.4 NC_004084.1 + 49455 0.67 0.619274
Target:  5'- cGUCGCCGccGUCuucGUcGCCGCUGUCCu -3'
miRNA:   3'- cCAGUGGC--UAGcu-CGuCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 20202 0.67 0.619274
Target:  5'- aGUCGCCGcAUCGAacgacagcGCGGCCGUUuuggaccucUCCg -3'
miRNA:   3'- cCAGUGGC-UAGCU--------CGUCGGCGGu--------AGG- -5'
16253 3' -56.4 NC_004084.1 + 981 0.67 0.619274
Target:  5'- uGUCGCUGAguUCGAGguGuuGuCCA-CCu -3'
miRNA:   3'- cCAGUGGCU--AGCUCguCggC-GGUaGG- -5'
16253 3' -56.4 NC_004084.1 + 56611 0.67 0.608515
Target:  5'- cGUCGCCGGUCG-GCgAGuUCGCCGgaUCg -3'
miRNA:   3'- cCAGUGGCUAGCuCG-UC-GGCGGU--AGg -5'
16253 3' -56.4 NC_004084.1 + 21796 0.67 0.608515
Target:  5'- cGUCACCGAUCaccuGGC-GCUucuCCGUCCg -3'
miRNA:   3'- cCAGUGGCUAGc---UCGuCGGc--GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 10905 0.67 0.640813
Target:  5'- gGGUacucCCGAUCGGGgAGuUCGUCGUCUu -3'
miRNA:   3'- -CCAgu--GGCUAGCUCgUC-GGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 16124 0.67 0.640813
Target:  5'- cGUCGCCGAUCGugaacGGguGaCCGCgGUg- -3'
miRNA:   3'- cCAGUGGCUAGC-----UCguC-GGCGgUAgg -5'
16253 3' -56.4 NC_004084.1 + 54567 0.67 0.662322
Target:  5'- uGGaCACCGAgguucCGGuGgAGCCGUCGUCg -3'
miRNA:   3'- -CCaGUGGCUa----GCU-CgUCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 14870 0.66 0.683723
Target:  5'- cGGcCGCCGGUCucGguGCCGUgcuuCGUCa -3'
miRNA:   3'- -CCaGUGGCUAGcuCguCGGCG----GUAGg -5'
16253 3' -56.4 NC_004084.1 + 10670 0.66 0.694358
Target:  5'- cGUUugCGAUCGccgGGCAGC-GaCCGUUCg -3'
miRNA:   3'- cCAGugGCUAGC---UCGUCGgC-GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 11046 0.66 0.704935
Target:  5'- cGUCGacgacgcggaCGAagGGGCGGCCGCCGa-- -3'
miRNA:   3'- cCAGUg---------GCUagCUCGUCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 15827 0.66 0.714397
Target:  5'- cGGcUC-CUGGUCGuuguagcacgaguGGCAGCuCGCCccAUCCa -3'
miRNA:   3'- -CC-AGuGGCUAGC-------------UCGUCG-GCGG--UAGG- -5'
16253 3' -56.4 NC_004084.1 + 56694 1.14 0.000437
Target:  5'- cGGUCACCGAUCGAGCAGCCGCCAUCCu -3'
miRNA:   3'- -CCAGUGGCUAGCUCGUCGGCGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.