Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 1002 | 0.72 | 0.382658 |
Target: 5'- gUCCACCuCGAGCucGCCggCGaCGUCGAcGCg -3' miRNA: 3'- -AGGUGG-GCUUG--CGGaaGC-GCAGCU-UG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 4240 | 0.67 | 0.689981 |
Target: 5'- cCCACCCGAcgugguCGCCUcguugcuucUCGCccuucgacgCGAACg -3' miRNA: 3'- aGGUGGGCUu-----GCGGA---------AGCGca-------GCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 5793 | 0.67 | 0.700688 |
Target: 5'- cUCACCCugguauccGACGCCgggCGUGUCGAc- -3' miRNA: 3'- aGGUGGGc-------UUGCGGaa-GCGCAGCUug -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 6488 | 0.66 | 0.721895 |
Target: 5'- cCCGgCUGAGCGaa--CGUGUCGAACu -3' miRNA: 3'- aGGUgGGCUUGCggaaGCGCAGCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 6775 | 0.69 | 0.560139 |
Target: 5'- cUCCugCgGAACGCCgaaGaCGUCGGGg -3' miRNA: 3'- -AGGugGgCUUGCGGaagC-GCAGCUUg -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 7674 | 0.67 | 0.700688 |
Target: 5'- cCCACCCGAugugGCGCUcguacgUCGuCGU-GAACu -3' miRNA: 3'- aGGUGGGCU----UGCGGa-----AGC-GCAgCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 9133 | 0.67 | 0.667332 |
Target: 5'- -aCAUCCgGAACGCCUUCGacuucgcCGUCGccguGACg -3' miRNA: 3'- agGUGGG-CUUGCGGAAGC-------GCAGC----UUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 9174 | 0.68 | 0.614093 |
Target: 5'- gCCGCUCGA--GCCUUCGgaUGUCGAGu -3' miRNA: 3'- aGGUGGGCUugCGGAAGC--GCAGCUUg -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 10372 | 0.7 | 0.528378 |
Target: 5'- gCCGUCCGGAUGagUUCGaCGUCGAGCu -3' miRNA: 3'- aGGUGGGCUUGCggAAGC-GCAGCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 13460 | 0.7 | 0.507578 |
Target: 5'- gUCCACUcgcgaCGAACGCCguucUCGuCGaCGAACg -3' miRNA: 3'- -AGGUGG-----GCUUGCGGa---AGC-GCaGCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 14643 | 0.68 | 0.592405 |
Target: 5'- cUCCGCCggCGAGCGCCcagUCGaUGcccgCGAGCg -3' miRNA: 3'- -AGGUGG--GCUUGCGGa--AGC-GCa---GCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 15548 | 0.74 | 0.324398 |
Target: 5'- gCCugCCGGAgUGCCagaUCGCGuUCGAACg -3' miRNA: 3'- aGGugGGCUU-GCGGa--AGCGC-AGCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 15885 | 0.66 | 0.763176 |
Target: 5'- gUCgAUCCGAGCGgCUUCcCGcagCGGGCg -3' miRNA: 3'- -AGgUGGGCUUGCgGAAGcGCa--GCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 17026 | 0.7 | 0.497309 |
Target: 5'- aUCCGCgaCCGAGCGUCUgCGCccGUCGAuGCg -3' miRNA: 3'- -AGGUG--GGCUUGCGGAaGCG--CAGCU-UG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 18252 | 0.68 | 0.603237 |
Target: 5'- gCCAuCCCGAugACGUCUUCGaaccgGUCGAc- -3' miRNA: 3'- aGGU-GGGCU--UGCGGAAGCg----CAGCUug -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 19647 | 0.68 | 0.635841 |
Target: 5'- -gCGCCCGAAgGUCgUCGUGcgucaUCGGACg -3' miRNA: 3'- agGUGGGCUUgCGGaAGCGC-----AGCUUG- -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 20234 | 0.66 | 0.763176 |
Target: 5'- gUCAUUCGAgaugACGCCga-GCGUCGAu- -3' miRNA: 3'- aGGUGGGCU----UGCGGaagCGCAGCUug -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 22255 | 0.67 | 0.657577 |
Target: 5'- cUCaACCCGGACGUCgacgUCGauccaGUCGAGg -3' miRNA: 3'- -AGgUGGGCUUGCGGa---AGCg----CAGCUUg -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 23339 | 0.68 | 0.624964 |
Target: 5'- gUCACCCGuaucAGCGUCUUCcGgGUCGAc- -3' miRNA: 3'- aGGUGGGC----UUGCGGAAG-CgCAGCUug -5' |
|||||||
16266 | 3' | -55.4 | NC_004084.1 | + | 23856 | 0.68 | 0.614093 |
Target: 5'- gCCGCCa--GCGCCcUCGCGaUGGACg -3' miRNA: 3'- aGGUGGgcuUGCGGaAGCGCaGCUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home