miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16285 5' -50.6 NC_004084.1 + 4196 0.68 0.862709
Target:  5'- cCGACGUCGAgAUCCGACucgagccgcuGACGGu-- -3'
miRNA:   3'- aGUUGUAGCUaUAGGCUG----------CUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 30413 0.68 0.854222
Target:  5'- cCGACGUCGAcGggCGGCGACGGa-- -3'
miRNA:   3'- aGUUGUAGCUaUagGCUGCUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 45629 0.68 0.854222
Target:  5'- aCAACcuGUCGGUcgUCGACGGCGucucGGAUg -3'
miRNA:   3'- aGUUG--UAGCUAuaGGCUGCUGC----CCUA- -5'
16285 5' -50.6 NC_004084.1 + 3830 0.69 0.836523
Target:  5'- gUCuuCGUCGAcg-CCGACGACGGc-- -3'
miRNA:   3'- -AGuuGUAGCUauaGGCUGCUGCCcua -5'
16285 5' -50.6 NC_004084.1 + 40152 0.69 0.817921
Target:  5'- cUCAACGUCGAccgGUUCGAagaCGucauCGGGAUg -3'
miRNA:   3'- -AGUUGUAGCUa--UAGGCU---GCu---GCCCUA- -5'
16285 5' -50.6 NC_004084.1 + 39244 0.7 0.788508
Target:  5'- aCGACAUCGGcaag-GGCGGCGGGAa -3'
miRNA:   3'- aGUUGUAGCUauaggCUGCUGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 49260 0.7 0.788508
Target:  5'- aUCGACGUCcacGUCaCGGCGACGGcGAa -3'
miRNA:   3'- -AGUUGUAGcuaUAG-GCUGCUGCC-CUa -5'
16285 5' -50.6 NC_004084.1 + 6709 0.71 0.692348
Target:  5'- gUCAACGccggCGAUGUCCGucCGguACGGGAa -3'
miRNA:   3'- -AGUUGUa---GCUAUAGGCu-GC--UGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 20057 0.72 0.669994
Target:  5'- gUCGAUgcuGUCGAUA-CCGACGACGccGGAg -3'
miRNA:   3'- -AGUUG---UAGCUAUaGGCUGCUGC--CCUa -5'
16285 5' -50.6 NC_004084.1 + 36545 0.72 0.636209
Target:  5'- gCGACAaCGGUAU-CGACGACGGaGAUg -3'
miRNA:   3'- aGUUGUaGCUAUAgGCUGCUGCC-CUA- -5'
16285 5' -50.6 NC_004084.1 + 36674 0.72 0.632824
Target:  5'- gCAGCAUCGAUGUCCaggaggacugcgauGACGuCGcGGAUc -3'
miRNA:   3'- aGUUGUAGCUAUAGG--------------CUGCuGC-CCUA- -5'
16285 5' -50.6 NC_004084.1 + 49851 0.73 0.613648
Target:  5'- gUCGACGUCGcgagcgagAUCCGGCGaguccuGCGGGAc -3'
miRNA:   3'- -AGUUGUAGCua------UAGGCUGC------UGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 26260 0.73 0.579957
Target:  5'- cUCGGCGUUGAUcaucGUCuCGuGCGACGGGAc -3'
miRNA:   3'- -AGUUGUAGCUA----UAG-GC-UGCUGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 45162 0.74 0.535708
Target:  5'- uUCAcCAUCGAUc-CCGACGACGGuGAg -3'
miRNA:   3'- -AGUuGUAGCUAuaGGCUGCUGCC-CUa -5'
16285 5' -50.6 NC_004084.1 + 37179 0.8 0.256552
Target:  5'- uUCGACAucaUCGAgaagaCCGACGACGGGAa -3'
miRNA:   3'- -AGUUGU---AGCUaua--GGCUGCUGCCCUa -5'
16285 5' -50.6 NC_004084.1 + 40899 0.98 0.020348
Target:  5'- uUCAACAUCGAUAUCCGACG-CGGGAUg -3'
miRNA:   3'- -AGUUGUAGCUAUAGGCUGCuGCCCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.