miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 48719 0.66 0.774859
Target:  5'- cGUCGGCCAaCUcacCGCGGUcucCGGCGggCCa -3'
miRNA:   3'- -CAGCUGGUaGA---GCGUCA---GCUGCa-GGa -5'
16346 5' -55.1 NC_004084.1 + 17257 0.66 0.774859
Target:  5'- -gCGGCCGg--UGCAGUCGGCGaugCCc -3'
miRNA:   3'- caGCUGGUagaGCGUCAGCUGCa--GGa -5'
16346 5' -55.1 NC_004084.1 + 34930 0.66 0.774859
Target:  5'- -cCGGCCAUCUCGUcacgGGCGUUCg -3'
miRNA:   3'- caGCUGGUAGAGCGucagCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 19079 0.66 0.774859
Target:  5'- -gCGGCCGUCUac--GUCGACGUCg- -3'
miRNA:   3'- caGCUGGUAGAgcguCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 27452 0.66 0.764827
Target:  5'- aUCGAuCCGgagCgggaGaCGGUCGGCGUCCUc -3'
miRNA:   3'- cAGCU-GGUa--Gag--C-GUCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 16259 0.66 0.764827
Target:  5'- cUCGACgGUUcUGCAGUCGAgugcaGUCCc -3'
miRNA:   3'- cAGCUGgUAGaGCGUCAGCUg----CAGGa -5'
16346 5' -55.1 NC_004084.1 + 35826 0.66 0.764827
Target:  5'- -aCcACCGUCUCGuCGG-CGACGUCg- -3'
miRNA:   3'- caGcUGGUAGAGC-GUCaGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 8915 0.66 0.764827
Target:  5'- -cCGACCGgaUCG-AGUCGACGUaCCg -3'
miRNA:   3'- caGCUGGUagAGCgUCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 40581 0.66 0.764827
Target:  5'- cUCGGCCGUCUCG-AGcUCGGCuUCUc -3'
miRNA:   3'- cAGCUGGUAGAGCgUC-AGCUGcAGGa -5'
16346 5' -55.1 NC_004084.1 + 5160 0.66 0.75466
Target:  5'- -cCGGCCcgAUCUCGUcgccGUCGACGaCCg -3'
miRNA:   3'- caGCUGG--UAGAGCGu---CAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 36154 0.66 0.75466
Target:  5'- cUCGACUggaUCGaC-GUCGACGUCCg -3'
miRNA:   3'- cAGCUGGuagAGC-GuCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 1416 0.66 0.75466
Target:  5'- cGUCG-CCAuUCUCgGC-GUCGcCGUCCUc -3'
miRNA:   3'- -CAGCuGGU-AGAG-CGuCAGCuGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 48405 0.66 0.753637
Target:  5'- aUCGuggccGCCAUCUCGgAgaucuucGUCGACGUCg- -3'
miRNA:   3'- cAGC-----UGGUAGAGCgU-------CAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 20444 0.66 0.744371
Target:  5'- aGUCGucaACCGUCUC--AGUCGGCGaCCg -3'
miRNA:   3'- -CAGC---UGGUAGAGcgUCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 9237 0.66 0.744371
Target:  5'- cUCGAUCAgggcguccagcgUCUCGgGGUCGuCGUUCg -3'
miRNA:   3'- cAGCUGGU------------AGAGCgUCAGCuGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 57105 0.66 0.744371
Target:  5'- --aGACCGcCUCGaucCAGUCGAggaCGUCCUc -3'
miRNA:   3'- cagCUGGUaGAGC---GUCAGCU---GCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 18247 0.66 0.738143
Target:  5'- aGUUGGCCAUCcCGaugacgucuucgaacCGGUCGACGUUg- -3'
miRNA:   3'- -CAGCUGGUAGaGC---------------GUCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 29768 0.66 0.73397
Target:  5'- -aUGACCGUCcugcaUCGCgacgGGUCGGCGUacaCCUa -3'
miRNA:   3'- caGCUGGUAG-----AGCG----UCAGCUGCA---GGA- -5'
16346 5' -55.1 NC_004084.1 + 51134 0.66 0.73397
Target:  5'- uGUCGuCCuugcucauggugAUCUCGguGUCGGugucgcucuCGUCCUg -3'
miRNA:   3'- -CAGCuGG------------UAGAGCguCAGCU---------GCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 32048 0.66 0.723469
Target:  5'- -aCGACgAUCccgaacgcgacUCGCuGuUCGACGUCCUc -3'
miRNA:   3'- caGCUGgUAG-----------AGCGuC-AGCUGCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.