miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16459 5' -54.7 NC_004084.1 + 12241 0.66 0.776545
Target:  5'- gAGGAGUUCUCCGGuCGuAG-UGUAgcGGCGa -3'
miRNA:   3'- -UCCUCAAGGGGUU-GC-UCuGCGU--UCGC- -5'
16459 5' -54.7 NC_004084.1 + 23156 0.66 0.776545
Target:  5'- gAGGAcUUCCCCcuCGGGACG-GAGUu -3'
miRNA:   3'- -UCCUcAAGGGGuuGCUCUGCgUUCGc -5'
16459 5' -54.7 NC_004084.1 + 43747 0.66 0.766457
Target:  5'- -cGAGga-CCCGGcCGGGACGCucGCGg -3'
miRNA:   3'- ucCUCaagGGGUU-GCUCUGCGuuCGC- -5'
16459 5' -54.7 NC_004084.1 + 28355 0.66 0.745879
Target:  5'- cGGcag-CCUCGACGGcuggcacaacGACGCGAGCGg -3'
miRNA:   3'- uCCucaaGGGGUUGCU----------CUGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 24012 0.66 0.745879
Target:  5'- aAGGAGaUCCgCGGCGuaguugcgugGGA-GCAAGCGg -3'
miRNA:   3'- -UCCUCaAGGgGUUGC----------UCUgCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 13182 0.66 0.745879
Target:  5'- cAGGGGUUCUCCGgauCGAGAUcCAGGa- -3'
miRNA:   3'- -UCCUCAAGGGGUu--GCUCUGcGUUCgc -5'
16459 5' -54.7 NC_004084.1 + 22593 0.66 0.735412
Target:  5'- -cGAcgUCgCCGACGAGACGguGGUGa -3'
miRNA:   3'- ucCUcaAGgGGUUGCUCUGCguUCGC- -5'
16459 5' -54.7 NC_004084.1 + 14275 0.67 0.724841
Target:  5'- uGGAGgUCCUCGuCGu--CGCGAGCGg -3'
miRNA:   3'- uCCUCaAGGGGUuGCucuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 41315 0.67 0.714178
Target:  5'- uGGAGcggaCCGGCGAG-CGCGGGUGa -3'
miRNA:   3'- uCCUCaaggGGUUGCUCuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 24007 0.67 0.703434
Target:  5'- uGGGGGcUCCCagaCGGCGAugGACGCGguuGCGg -3'
miRNA:   3'- -UCCUCaAGGG---GUUGCU--CUGCGUu--CGC- -5'
16459 5' -54.7 NC_004084.1 + 54750 0.67 0.69262
Target:  5'- gAGGAGUUCCUCGACGccaAGcccaaccccCGCcAGCGc -3'
miRNA:   3'- -UCCUCAAGGGGUUGC---UCu--------GCGuUCGC- -5'
16459 5' -54.7 NC_004084.1 + 16847 0.68 0.670829
Target:  5'- cGGGAGaUCCCguCGAUGAu-CGCAAGUGg -3'
miRNA:   3'- -UCCUCaAGGG--GUUGCUcuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 57305 0.68 0.637895
Target:  5'- cAGGAccUCCUCGACGAggggGACGCcuacaAAGCGg -3'
miRNA:   3'- -UCCUcaAGGGGUUGCU----CUGCG-----UUCGC- -5'
16459 5' -54.7 NC_004084.1 + 41458 0.68 0.626893
Target:  5'- gAGGucuugcAGUggCCCGGCGAG-UGCGGGCGa -3'
miRNA:   3'- -UCC------UCAagGGGUUGCUCuGCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 51629 0.68 0.615896
Target:  5'- cGGGAGcugaUCCCCGACGucuucGGCGUuccgcaggAGGCGa -3'
miRNA:   3'- -UCCUCa---AGGGGUUGCu----CUGCG--------UUCGC- -5'
16459 5' -54.7 NC_004084.1 + 4909 0.68 0.615896
Target:  5'- gAGGAGUUCCUCGAgcacuacguCGAGGgGCuccAGCc -3'
miRNA:   3'- -UCCUCAAGGGGUU---------GCUCUgCGu--UCGc -5'
16459 5' -54.7 NC_004084.1 + 3016 0.68 0.615896
Target:  5'- cGGGAcagcgUCCCCGACGuGGCGaauacGGCGa -3'
miRNA:   3'- -UCCUca---AGGGGUUGCuCUGCgu---UCGC- -5'
16459 5' -54.7 NC_004084.1 + 17893 0.69 0.604913
Target:  5'- --aGGUagUCCAACGAGAacaGCGAGCGg -3'
miRNA:   3'- uccUCAagGGGUUGCUCUg--CGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 645 0.69 0.583026
Target:  5'- uGGAGcUCCUCGACGGcgucGugGUAGGUGu -3'
miRNA:   3'- uCCUCaAGGGGUUGCU----CugCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 56306 0.69 0.583026
Target:  5'- gAGGAugcGUccgUUCUCGACGAGGauuCGCAGGCGa -3'
miRNA:   3'- -UCCU---CA---AGGGGUUGCUCU---GCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.