miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16459 5' -54.7 NC_004084.1 + 48759 0.69 0.581935
Target:  5'- uAGGAGaucgagUCCCCcaugaucgugucgGACGAGAUGCccucGGCGu -3'
miRNA:   3'- -UCCUCa-----AGGGG-------------UUGCUCUGCGu---UCGC- -5'
16459 5' -54.7 NC_004084.1 + 4369 0.7 0.52916
Target:  5'- aAGGAGUUCgCUGAgGAGACGauccagccCAAGCa -3'
miRNA:   3'- -UCCUCAAGgGGUUgCUCUGC--------GUUCGc -5'
16459 5' -54.7 NC_004084.1 + 27960 0.7 0.518593
Target:  5'- cGGGGUUCaCCC-ACcAGACGCGuGCGu -3'
miRNA:   3'- uCCUCAAG-GGGuUGcUCUGCGUuCGC- -5'
16459 5' -54.7 NC_004084.1 + 57787 0.7 0.49772
Target:  5'- gAGGAGcUCCaCGACGAGAuCGCcAGCu -3'
miRNA:   3'- -UCCUCaAGGgGUUGCUCU-GCGuUCGc -5'
16459 5' -54.7 NC_004084.1 + 27966 0.71 0.467145
Target:  5'- gAGGAacgUCCCCAGCGGGACGUc---- -3'
miRNA:   3'- -UCCUca-AGGGGUUGCUCUGCGuucgc -5'
16459 5' -54.7 NC_004084.1 + 15435 0.71 0.447309
Target:  5'- -cGAGUUCCUCAuCGAGGCGCucgaucGCGu -3'
miRNA:   3'- ucCUCAAGGGGUuGCUCUGCGuu----CGC- -5'
16459 5' -54.7 NC_004084.1 + 30463 0.73 0.381806
Target:  5'- gGGGAcGUUCCUCuACGAGGCGCu-GCc -3'
miRNA:   3'- -UCCU-CAAGGGGuUGCUCUGCGuuCGc -5'
16459 5' -54.7 NC_004084.1 + 3108 0.73 0.37826
Target:  5'- -uGAGUUCCUCGAUGAGAgggaguucucugaGCAAGCGa -3'
miRNA:   3'- ucCUCAAGGGGUUGCUCUg------------CGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 3390 0.74 0.339099
Target:  5'- cGGAGcUCCUcgagcaCAACGAGACGCAcGCa -3'
miRNA:   3'- uCCUCaAGGG------GUUGCUCUGCGUuCGc -5'
16459 5' -54.7 NC_004084.1 + 28874 0.74 0.339099
Target:  5'- uGGGcGUUCCgCAGCGAGAucucgcCGCGGGUGg -3'
miRNA:   3'- -UCCuCAAGGgGUUGCUCU------GCGUUCGC- -5'
16459 5' -54.7 NC_004084.1 + 3489 0.76 0.226361
Target:  5'- cGGAGgaUCCCGAuCGAGACGgCGAGCa -3'
miRNA:   3'- uCCUCaaGGGGUU-GCUCUGC-GUUCGc -5'
16459 5' -54.7 NC_004084.1 + 51677 0.77 0.198286
Target:  5'- gAGGAGUUCCCCuACGGGACGUc---- -3'
miRNA:   3'- -UCCUCAAGGGGuUGCUCUGCGuucgc -5'
16459 5' -54.7 NC_004084.1 + 10221 0.78 0.178058
Target:  5'- gAGGAGUUCCUUgaguACGAG-CGCGAGCa -3'
miRNA:   3'- -UCCUCAAGGGGu---UGCUCuGCGUUCGc -5'
16459 5' -54.7 NC_004084.1 + 43015 1.1 0.001077
Target:  5'- gAGGAGUUCCCCAACGAGACGCAAGCGg -3'
miRNA:   3'- -UCCUCAAGGGGUUGCUCUGCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.