miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 5' -55.5 NC_004084.1 + 57442 1.06 0.001805
Target:  5'- cAACCUCGAACUCAGCGACACCGACCGc -3'
miRNA:   3'- -UUGGAGCUUGAGUCGCUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 37385 0.81 0.095521
Target:  5'- uGACUUCGAcgaACUCGGCaGACGCUGGCCGa -3'
miRNA:   3'- -UUGGAGCU---UGAGUCG-CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 30944 0.8 0.119603
Target:  5'- cGACgUCGAGCUCgAG-GACGCCGACCGu -3'
miRNA:   3'- -UUGgAGCUUGAG-UCgCUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 1005 0.78 0.153381
Target:  5'- cACCUCGAGCUCgccGGCGACGUCGACgCGa -3'
miRNA:   3'- uUGGAGCUUGAG---UCGCUGUGGCUG-GC- -5'
16502 5' -55.5 NC_004084.1 + 6183 0.77 0.187404
Target:  5'- gGACCUCGAGCUCGucucgaucgaggcucGCGAgACCGACg- -3'
miRNA:   3'- -UUGGAGCUUGAGU---------------CGCUgUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 9484 0.76 0.229093
Target:  5'- cACCUgGAGCUgaAGCccGGCGCCGACCGg -3'
miRNA:   3'- uUGGAgCUUGAg-UCG--CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 51683 0.75 0.247598
Target:  5'- cGCCgucaUCGGACUCGGCGGCAUCaaaggGACCGc -3'
miRNA:   3'- uUGG----AGCUUGAGUCGCUGUGG-----CUGGC- -5'
16502 5' -55.5 NC_004084.1 + 13590 0.74 0.267322
Target:  5'- cGACCUCGGucaGCUCGauacCGuCACCGACCGg -3'
miRNA:   3'- -UUGGAGCU---UGAGUc---GCuGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 7237 0.73 0.32609
Target:  5'- cGACCUCGAcgaucggcgcguGCUCGGCGACcgucUCGAUCGc -3'
miRNA:   3'- -UUGGAGCU------------UGAGUCGCUGu---GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 10943 0.73 0.32609
Target:  5'- cACCUCGAACagccaguccCGGuCGACAUCGACCa -3'
miRNA:   3'- uUGGAGCUUGa--------GUC-GCUGUGGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 44670 0.73 0.334076
Target:  5'- cGACCUCGAG---GGCGA-GCCGACCGg -3'
miRNA:   3'- -UUGGAGCUUgagUCGCUgUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 57507 0.72 0.350474
Target:  5'- aGGCCgcagCGAACUCcGaCGACGCCGACa- -3'
miRNA:   3'- -UUGGa---GCUUGAGuC-GCUGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 35449 0.72 0.367436
Target:  5'- --aCUgGGACUgAGUGACAUCGACCa -3'
miRNA:   3'- uugGAgCUUGAgUCGCUGUGGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 32215 0.72 0.384955
Target:  5'- cGCCUCGAgauGCUCcucGaCGACGCCGACgGu -3'
miRNA:   3'- uUGGAGCU---UGAGu--C-GCUGUGGCUGgC- -5'
16502 5' -55.5 NC_004084.1 + 36504 0.72 0.393919
Target:  5'- cGACgUCGAACUCgaugAG-GAgGCCGACCGa -3'
miRNA:   3'- -UUGgAGCUUGAG----UCgCUgUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 47651 0.72 0.393919
Target:  5'- cGGCgUCGAGgUCGGCGACGCCcccACUGg -3'
miRNA:   3'- -UUGgAGCUUgAGUCGCUGUGGc--UGGC- -5'
16502 5' -55.5 NC_004084.1 + 48152 0.71 0.412247
Target:  5'- -cCCUCGAACaUCGuGauccgGACGCCGACCGc -3'
miRNA:   3'- uuGGAGCUUG-AGU-Cg----CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 46822 0.71 0.431093
Target:  5'- cGACCUgCGAcaACUgCGGCGACACCGuuCa -3'
miRNA:   3'- -UUGGA-GCU--UGA-GUCGCUGUGGCugGc -5'
16502 5' -55.5 NC_004084.1 + 16875 0.7 0.450435
Target:  5'- gGAUCUCGAGCgCGGCGuCugcuCCGAUCGa -3'
miRNA:   3'- -UUGGAGCUUGaGUCGCuGu---GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 33039 0.7 0.460283
Target:  5'- cGACCUCGAcugACUCGGCGcucACGUCGAuCCGu -3'
miRNA:   3'- -UUGGAGCU---UGAGUCGC---UGUGGCU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.