miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 5' -55.5 NC_004084.1 + 771 0.66 0.705577
Target:  5'- aGGCCgaUCG-GCUCgucgaGGCGACGCgCGACCu -3'
miRNA:   3'- -UUGG--AGCuUGAG-----UCGCUGUG-GCUGGc -5'
16502 5' -55.5 NC_004084.1 + 1005 0.78 0.153381
Target:  5'- cACCUCGAGCUCgccGGCGACGUCGACgCGa -3'
miRNA:   3'- uUGGAGCUUGAG---UCGCUGUGGCUG-GC- -5'
16502 5' -55.5 NC_004084.1 + 1797 0.69 0.532117
Target:  5'- gAGCCaCGAuC-CGGCGAacuCGCCGACCGg -3'
miRNA:   3'- -UUGGaGCUuGaGUCGCU---GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 2153 0.66 0.726846
Target:  5'- cGACgUCGuACUCguaGGCGACACCaGCaCGg -3'
miRNA:   3'- -UUGgAGCuUGAG---UCGCUGUGGcUG-GC- -5'
16502 5' -55.5 NC_004084.1 + 3338 0.66 0.737346
Target:  5'- -gUCUCGGACgggggaggAGCG-CGCCGGCCa -3'
miRNA:   3'- uuGGAGCUUGag------UCGCuGUGGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 3817 0.68 0.574951
Target:  5'- cGACCUCGAuccaguCUUcGuCGACGCCGACg- -3'
miRNA:   3'- -UUGGAGCUu-----GAGuC-GCUGUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 5123 0.69 0.521581
Target:  5'- cGACCgUCGAuacaacCUCGGCGugG-CGACCGa -3'
miRNA:   3'- -UUGG-AGCUu-----GAGUCGCugUgGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 6183 0.77 0.187404
Target:  5'- gGACCUCGAGCUCGucucgaucgaggcucGCGAgACCGACg- -3'
miRNA:   3'- -UUGGAGCUUGAGU---------------CGCUgUGGCUGgc -5'
16502 5' -55.5 NC_004084.1 + 7237 0.73 0.32609
Target:  5'- cGACCUCGAcgaucggcgcguGCUCGGCGACcgucUCGAUCGc -3'
miRNA:   3'- -UUGGAGCU------------UGAGUCGCUGu---GGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 7245 0.67 0.629465
Target:  5'- -uCCUCGAcuggguccaggACgagAGCGACACCGAcaCCGa -3'
miRNA:   3'- uuGGAGCU-----------UGag-UCGCUGUGGCU--GGC- -5'
16502 5' -55.5 NC_004084.1 + 7449 0.68 0.61852
Target:  5'- aGACCUCGGAgUCcgacGGCGAC-UCGAgCGg -3'
miRNA:   3'- -UUGGAGCUUgAG----UCGCUGuGGCUgGC- -5'
16502 5' -55.5 NC_004084.1 + 7945 0.68 0.573869
Target:  5'- -cCCUC-AACaUCGGCGAacgacacCGCCGACCGc -3'
miRNA:   3'- uuGGAGcUUG-AGUCGCU-------GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 8894 0.67 0.629465
Target:  5'- cACCUCGAucgUCcGUgGAUGCCGACCGg -3'
miRNA:   3'- uUGGAGCUug-AGuCG-CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 9484 0.76 0.229093
Target:  5'- cACCUgGAGCUgaAGCccGGCGCCGACCGg -3'
miRNA:   3'- uUGGAgCUUGAg-UCG--CUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 10860 0.66 0.716252
Target:  5'- -uCCUCGAAC--GGCGucuccucCACUGGCCGg -3'
miRNA:   3'- uuGGAGCUUGagUCGCu------GUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 10943 0.73 0.32609
Target:  5'- cACCUCGAACagccaguccCGGuCGACAUCGACCa -3'
miRNA:   3'- uUGGAGCUUGa--------GUC-GCUGUGGCUGGc -5'
16502 5' -55.5 NC_004084.1 + 11291 0.7 0.504896
Target:  5'- -cCCUCucGCUCGGCGuCgcaccggaugcagguGCCGACCGg -3'
miRNA:   3'- uuGGAGcuUGAGUCGCuG---------------UGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 12737 0.68 0.607588
Target:  5'- -uCCgcgcaCGAuCUCGuCGACGCCGACCGu -3'
miRNA:   3'- uuGGa----GCUuGAGUcGCUGUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 12899 0.66 0.737346
Target:  5'- -cCCggCGucCUCGGaGugGCCGACCGg -3'
miRNA:   3'- uuGGa-GCuuGAGUCgCugUGGCUGGC- -5'
16502 5' -55.5 NC_004084.1 + 13137 0.66 0.705577
Target:  5'- aGACUUCGA---CGGCGACGauucggaCGACCGa -3'
miRNA:   3'- -UUGGAGCUugaGUCGCUGUg------GCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.