miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19092 5' -67.3 NC_004684.1 + 21253 0.65 0.265911
Target:  5'- aGGgCACCaucGGCCugGGCgaugugauccagaaGGUCAGCu -3'
miRNA:   3'- gCCgGUGGc--CCGGugCCG--------------CCGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 18675 0.66 0.261616
Target:  5'- -cGCCGCUGGGCgCgACGGUaaccaucaGCCAGCa -3'
miRNA:   3'- gcCGGUGGCCCG-G-UGCCGc-------CGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 57841 0.66 0.261616
Target:  5'- uGGCCGCCGGuacccGCC-CGauuGCCAGCGu -3'
miRNA:   3'- gCCGGUGGCC-----CGGuGCcgcCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 48969 0.66 0.261616
Target:  5'- gGGUgGCCGGGgCG-GGCGcGUCGGUGc -3'
miRNA:   3'- gCCGgUGGCCCgGUgCCGC-CGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 60487 0.66 0.261616
Target:  5'- gGGCaaCACCGGGUgcaggACGGUGaCCAGCa -3'
miRNA:   3'- gCCG--GUGGCCCGg----UGCCGCcGGUCGc -5'
19092 5' -67.3 NC_004684.1 + 692 0.66 0.261616
Target:  5'- uCGGCC-CCGaGGUCAgccgccggUGGaCGGCCuGGCGc -3'
miRNA:   3'- -GCCGGuGGC-CCGGU--------GCC-GCCGG-UCGC- -5'
19092 5' -67.3 NC_004684.1 + 51463 0.66 0.261616
Target:  5'- cCGGUgGCCGaGGCCcccaggAUGGCGaCCuGCGg -3'
miRNA:   3'- -GCCGgUGGC-CCGG------UGCCGCcGGuCGC- -5'
19092 5' -67.3 NC_004684.1 + 29954 0.66 0.261616
Target:  5'- uCGGUCAccuCCGGuGCCACcaccguGGCGGUgucgauggaCAGCGu -3'
miRNA:   3'- -GCCGGU---GGCC-CGGUG------CCGCCG---------GUCGC- -5'
19092 5' -67.3 NC_004684.1 + 10247 0.66 0.261616
Target:  5'- uGGCCgugcgcguggAgCGGGCCAaccaacUGGCCAGCGa -3'
miRNA:   3'- gCCGG----------UgGCCCGGUgcc---GCCGGUCGC- -5'
19092 5' -67.3 NC_004684.1 + 51321 0.66 0.261615
Target:  5'- uCGGCuCACCggcGGGCCACGcuuGCuuGGCCA-CGa -3'
miRNA:   3'- -GCCG-GUGG---CCCGGUGC---CG--CCGGUcGC- -5'
19092 5' -67.3 NC_004684.1 + 57843 0.66 0.261615
Target:  5'- gCGGCgCACCGGcuCCAacCGGCGcaCCAGCu -3'
miRNA:   3'- -GCCG-GUGGCCc-GGU--GCCGCc-GGUCGc -5'
19092 5' -67.3 NC_004684.1 + 64345 0.66 0.261615
Target:  5'- gCGcGCCAccacCCGGGCCucguUGuGCGGCCccucGGUGa -3'
miRNA:   3'- -GC-CGGU----GGCCCGGu---GC-CGCCGG----UCGC- -5'
19092 5' -67.3 NC_004684.1 + 169 0.66 0.261007
Target:  5'- cCGGUgACCGGGuuggucgggaccaCCACcaaGGUGGCCcuGGCa -3'
miRNA:   3'- -GCCGgUGGCCC-------------GGUG---CCGCCGG--UCGc -5'
19092 5' -67.3 NC_004684.1 + 11800 0.66 0.260399
Target:  5'- aGGCCACCGuggagaaGGgCGCGaGCGcGCCgcuguccGGCGa -3'
miRNA:   3'- gCCGGUGGC-------CCgGUGC-CGC-CGG-------UCGC- -5'
19092 5' -67.3 NC_004684.1 + 15163 0.66 0.259792
Target:  5'- uGGCCGCCGccGCCACGcaccugggacugguGCuGCgCAGCGg -3'
miRNA:   3'- gCCGGUGGCc-CGGUGC--------------CGcCG-GUCGC- -5'
19092 5' -67.3 NC_004684.1 + 39287 0.66 0.259792
Target:  5'- aGGCCucgaACCgcaccacccggugcGGGUCgcGCGGCGGcCCGGCc -3'
miRNA:   3'- gCCGG----UGG--------------CCCGG--UGCCGCC-GGUCGc -5'
19092 5' -67.3 NC_004684.1 + 14708 0.66 0.255578
Target:  5'- -cGCCGCaGGGCCuguACGG-GGCCAcGCa -3'
miRNA:   3'- gcCGGUGgCCCGG---UGCCgCCGGU-CGc -5'
19092 5' -67.3 NC_004684.1 + 57141 0.66 0.255578
Target:  5'- gCGGCUgguucGCCuccauGGCgGCGGUGGCCGacGCGc -3'
miRNA:   3'- -GCCGG-----UGGc----CCGgUGCCGCCGGU--CGC- -5'
19092 5' -67.3 NC_004684.1 + 57184 0.66 0.255578
Target:  5'- uCGGgCGCaggCGGGCCuggaaGGCGGCgGcGCGa -3'
miRNA:   3'- -GCCgGUG---GCCCGGug---CCGCCGgU-CGC- -5'
19092 5' -67.3 NC_004684.1 + 65766 0.66 0.255578
Target:  5'- uGGCCGCCGcGcGCCGgugGGCGcGCgcaCGGCGa -3'
miRNA:   3'- gCCGGUGGC-C-CGGUg--CCGC-CG---GUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.