miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 57765 0.67 0.872413
Target:  5'- --cGCCCGCCGCgCCAAGcgccaCACGu -3'
miRNA:   3'- cguCGGGCGGCG-GGUUUauaacGUGC- -5'
21188 5' -54.3 NC_004778.3 + 33833 0.69 0.823531
Target:  5'- gGCAGCCUGCgCGCUCAacgccGAUAaccGCugGu -3'
miRNA:   3'- -CGUCGGGCG-GCGGGU-----UUAUaa-CGugC- -5'
21188 5' -54.3 NC_004778.3 + 80283 0.69 0.823531
Target:  5'- gGCAGCUCaUCGCCCGAcUGggcgUGCAUa -3'
miRNA:   3'- -CGUCGGGcGGCGGGUUuAUa---ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 1599 0.68 0.840643
Target:  5'- uGCGGCCCGuCCGCgcacuccuUCAAAcacacGUUGCGCu -3'
miRNA:   3'- -CGUCGGGC-GGCG--------GGUUUa----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 121881 0.68 0.840643
Target:  5'- aCGG-CCGuuGCCCAAGUuacgcgUGCugGg -3'
miRNA:   3'- cGUCgGGCggCGGGUUUAua----ACGugC- -5'
21188 5' -54.3 NC_004778.3 + 35139 0.68 0.840643
Target:  5'- uGCuGCCgGCCGaCgCAAAUugcgcGUUGCACa -3'
miRNA:   3'- -CGuCGGgCGGC-GgGUUUA-----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 120976 0.68 0.848903
Target:  5'- cGC-GCCCGCUGCCCcg-----GCGCc -3'
miRNA:   3'- -CGuCGGGCGGCGGGuuuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 43143 0.68 0.861686
Target:  5'- cGCGGCgCGCCGCacguuuuugaacgCGGGUuuggUGCACGa -3'
miRNA:   3'- -CGUCGgGCGGCGg------------GUUUAua--ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 63199 0.68 0.864795
Target:  5'- cGCGGCUgGCUGCCCGGAUGa------ -3'
miRNA:   3'- -CGUCGGgCGGCGGGUUUAUaacgugc -5'
21188 5' -54.3 NC_004778.3 + 42632 0.69 0.805685
Target:  5'- uGCGuuCCCGCCGCCgAcgg--UGCACGa -3'
miRNA:   3'- -CGUc-GGGCGGCGGgUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 121151 0.69 0.784347
Target:  5'- -aAGCCCaagucgccaauuagGUCGCCCAG--GUUGUACGg -3'
miRNA:   3'- cgUCGGG--------------CGGCGGGUUuaUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 33088 0.7 0.748471
Target:  5'- aGCGGCCCGCUGCCgCGcuacacGUACa -3'
miRNA:   3'- -CGUCGGGCGGCGG-GUuuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 112221 0.76 0.434053
Target:  5'- aGCGGCCgCGCgGUCCAGGUGauaGCACGc -3'
miRNA:   3'- -CGUCGG-GCGgCGGGUUUAUaa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 52521 0.73 0.561891
Target:  5'- cCAGCCgGCCGgCCAAcugcGUGUUGCAa- -3'
miRNA:   3'- cGUCGGgCGGCgGGUU----UAUAACGUgc -5'
21188 5' -54.3 NC_004778.3 + 111675 0.73 0.57952
Target:  5'- uCAGCCCGCCGUugucggcuagcaggCCGAGcUGUUGCAgCGu -3'
miRNA:   3'- cGUCGGGCGGCG--------------GGUUU-AUAACGU-GC- -5'
21188 5' -54.3 NC_004778.3 + 79345 0.73 0.582644
Target:  5'- gGCGGCCC-CCGCCguGGUAUaucgaucGCGCGg -3'
miRNA:   3'- -CGUCGGGcGGCGGguUUAUAa------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 43985 0.72 0.635049
Target:  5'- -uGGCgCGCCGCCCAAc----GCGCGg -3'
miRNA:   3'- cgUCGgGCGGCGGGUUuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 106299 0.71 0.687382
Target:  5'- cGCccguGCCCGCCGCagccccagccCCGGuuugAUUGCGCGc -3'
miRNA:   3'- -CGu---CGGGCGGCG----------GGUUua--UAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 2409 0.7 0.7385
Target:  5'- --uGCCCG-CGCCCGAcgaccacuuUAUUGCGCGu -3'
miRNA:   3'- cguCGGGCgGCGGGUUu--------AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 21101 0.7 0.748471
Target:  5'- uGCAGCCCGCggagcggacguUGCCCAGAUc--GC-CGa -3'
miRNA:   3'- -CGUCGGGCG-----------GCGGGUUUAuaaCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.