Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21188 | 5' | -54.3 | NC_004778.3 | + | 96501 | 0.66 | 0.93742 |
Target: 5'- cGCGGCggugUCGuCCGCCCAAcacaguGUGUucgcgucugcgggcgUGCACGc -3' miRNA: 3'- -CGUCG----GGC-GGCGGGUU------UAUA---------------ACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 64779 | 0.67 | 0.893882 |
Target: 5'- uGUGGCCCGCgccguugaaagCGCaCGGAUGUgcaUGCACGc -3' miRNA: 3'- -CGUCGGGCG-----------GCGgGUUUAUA---ACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 103796 | 0.67 | 0.879803 |
Target: 5'- cCGGCCC-CCGCgCAAGc-UUGCACa -3' miRNA: 3'- cGUCGGGcGGCGgGUUUauAACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 120440 | 1.1 | 0.002798 |
Target: 5'- uGCAGCCCGCCGCCCAAAUAUUGCACGc -3' miRNA: 3'- -CGUCGGGCGGCGGGUUUAUAACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 46167 | 0.66 | 0.930237 |
Target: 5'- cGCGGagCCGCCGCgCCGuucc--GCGCGu -3' miRNA: 3'- -CGUCg-GGCGGCG-GGUuuauaaCGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 40242 | 0.66 | 0.924804 |
Target: 5'- aUAGCCaGgCGCCCAAAaagacggGCGCGg -3' miRNA: 3'- cGUCGGgCgGCGGGUUUauaa---CGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 5372 | 0.66 | 0.924804 |
Target: 5'- uCAGCgCGCCGUgCAuc---UGCACGa -3' miRNA: 3'- cGUCGgGCGGCGgGUuuauaACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 5257 | 0.66 | 0.924804 |
Target: 5'- uGCGGUuuGUucacaacaaCGCCCAGuacaccgUGCACGg -3' miRNA: 3'- -CGUCGggCG---------GCGGGUUuaua---ACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 92890 | 0.67 | 0.906996 |
Target: 5'- cGC-GCgCGCCGguUCCAAAUGcgGCGCGu -3' miRNA: 3'- -CGuCGgGCGGC--GGGUUUAUaaCGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 86309 | 0.67 | 0.899905 |
Target: 5'- uGCGGCgCGCCGCggcgccgUCGAAgcgcUUGCGCa -3' miRNA: 3'- -CGUCGgGCGGCG-------GGUUUau--AACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 121395 | 0.67 | 0.900562 |
Target: 5'- uCAGCCCGCgGC---GAUGggUGCACGc -3' miRNA: 3'- cGUCGGGCGgCGgguUUAUa-ACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 81542 | 0.66 | 0.912575 |
Target: 5'- -uGGCCCGCUaGCCCAAAgagcuccucgucgccGCACa -3' miRNA: 3'- cgUCGGGCGG-CGGGUUUauaa-----------CGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 32276 | 0.66 | 0.935418 |
Target: 5'- aGCAGCgCCaaCGCCCAGcaa-UGCACc -3' miRNA: 3'- -CGUCG-GGcgGCGGGUUuauaACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 64130 | 0.67 | 0.900562 |
Target: 5'- aGCAGgUCGuuGCCCGAuucUGUgcaaacguugGCGCGg -3' miRNA: 3'- -CGUCgGGCggCGGGUUu--AUAa---------CGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 59443 | 0.66 | 0.935418 |
Target: 5'- -uGGCgUCGCUGCCCA---GUUGCAgGu -3' miRNA: 3'- cgUCG-GGCGGCGGGUuuaUAACGUgC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 59718 | 0.66 | 0.915587 |
Target: 5'- cGCAGCCagugcacaaacuuuuCGUCGCgCAGGUuggucUUGCACa -3' miRNA: 3'- -CGUCGG---------------GCGGCGgGUUUAu----AACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 63364 | 0.67 | 0.900562 |
Target: 5'- gGCAGCCUauguuGuuGCCCGuGUAUgcGUACGc -3' miRNA: 3'- -CGUCGGG-----CggCGGGUuUAUAa-CGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 107952 | 0.67 | 0.879803 |
Target: 5'- gGCGGCgCCaucCgGCCCGAuuuUGUUGUACGc -3' miRNA: 3'- -CGUCG-GGc--GgCGGGUUu--AUAACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 86927 | 0.66 | 0.930237 |
Target: 5'- aGCAGCCCGuuGUCgg------GCACGc -3' miRNA: 3'- -CGUCGGGCggCGGguuuauaaCGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 30732 | 0.66 | 0.924804 |
Target: 5'- cGCGGCCgGCUGCCauCGAAaGUU-CGCGu -3' miRNA: 3'- -CGUCGGgCGGCGG--GUUUaUAAcGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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