Results 21 - 40 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 102914 | 0.66 | 0.902459 |
Target: 5'- gCGCCUCGggggggCGgCCGcGaaCGAGAGCCg -3' miRNA: 3'- gGCGGAGUa-----GCaGGU-CcaGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 70270 | 0.66 | 0.902459 |
Target: 5'- aUCGCgguggggggcaaCUCGUUGUCCGGGgcguugUCGAGAucgcggaacucgGCCa -3' miRNA: 3'- -GGCG------------GAGUAGCAGGUCC------AGCUCU------------CGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 8233 | 0.66 | 0.914357 |
Target: 5'- gCGCC-CggCGgCCGGGcCGGGGGUCc -3' miRNA: 3'- gGCGGaGuaGCaGGUCCaGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 126608 | 0.66 | 0.896174 |
Target: 5'- -gGCC-CAgcgCGUCCuGGccaUCGAGGGCg -3' miRNA: 3'- ggCGGaGUa--GCAGGuCC---AGCUCUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 60583 | 0.66 | 0.914357 |
Target: 5'- gCGCaC-CcgCGUCCAGGUCccguagcggaGGGGGCg -3' miRNA: 3'- gGCG-GaGuaGCAGGUCCAG----------CUCUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 147981 | 0.66 | 0.919967 |
Target: 5'- uCCGUgCUCAUgGcgCCGGG-CGgcGGGGCCg -3' miRNA: 3'- -GGCG-GAGUAgCa-GGUCCaGC--UCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 11302 | 0.66 | 0.902459 |
Target: 5'- gCGCCgcgCGgggCGcCgCGGGgCGGGGGCCg -3' miRNA: 3'- gGCGGa--GUa--GCaG-GUCCaGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 145801 | 0.66 | 0.902459 |
Target: 5'- gCGCCUCGggcUCGgugugggcggCgGGGUCGGcGGCCc -3' miRNA: 3'- gGCGGAGU---AGCa---------GgUCCAGCUcUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 10353 | 0.66 | 0.914357 |
Target: 5'- gCCGUCUCGUCGUCgcucuccgugUAGuacgccUCGGGGGUCu -3' miRNA: 3'- -GGCGGAGUAGCAG----------GUCc-----AGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 25597 | 0.66 | 0.919967 |
Target: 5'- cCCGCCUCGUCcUUCucGUCGucGGCg -3' miRNA: 3'- -GGCGGAGUAGcAGGucCAGCucUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 128480 | 0.66 | 0.919967 |
Target: 5'- aCCGUCUCGcCGaUCAGGaggagcagcUCGAGgaAGCCg -3' miRNA: 3'- -GGCGGAGUaGCaGGUCC---------AGCUC--UCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 82044 | 0.66 | 0.902459 |
Target: 5'- cCCGCCUCcgCGaggaCguGGUggcgCGGGuGCCg -3' miRNA: 3'- -GGCGGAGuaGCa---GguCCA----GCUCuCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 141557 | 0.66 | 0.914357 |
Target: 5'- gCCGCCagUCcgCcUCCAGGUCccgguGAGCg -3' miRNA: 3'- -GGCGG--AGuaGcAGGUCCAGcu---CUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 46410 | 0.66 | 0.910882 |
Target: 5'- gCGUCUCGUgcagcgCGUCCAGGuacgccgccuccucgUCGAcacccccgcGGGCCa -3' miRNA: 3'- gGCGGAGUA------GCAGGUCC---------------AGCU---------CUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 8841 | 0.66 | 0.896174 |
Target: 5'- -aGCCUCGgcgaccccgCGUCCcg--CGGGAGCCc -3' miRNA: 3'- ggCGGAGUa--------GCAGGuccaGCUCUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 105852 | 0.66 | 0.896174 |
Target: 5'- uCgGCCUCGgggaCGUCggacggCGGGUCGuGGGCg -3' miRNA: 3'- -GgCGGAGUa---GCAG------GUCCAGCuCUCGg -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 51163 | 0.66 | 0.896174 |
Target: 5'- cCCGCCccgCGUCGUUCccgacucgggcGGGcgCGGGcGCCg -3' miRNA: 3'- -GGCGGa--GUAGCAGG-----------UCCa-GCUCuCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 27866 | 0.66 | 0.902459 |
Target: 5'- cCCGCagUCGcucUCGgaagCUGGGUCGGuGGGCCc -3' miRNA: 3'- -GGCGg-AGU---AGCa---GGUCCAGCU-CUCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 115258 | 0.66 | 0.908521 |
Target: 5'- -gGCCUCG--GUUCGGGacUCGAG-GCCg -3' miRNA: 3'- ggCGGAGUagCAGGUCC--AGCUCuCGG- -5' |
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21387 | 3' | -56.7 | NC_004812.1 | + | 14070 | 0.66 | 0.910882 |
Target: 5'- cCCGCCUCGUCGaUCacgacgauguugcugCGGGUgaacgcgGGGAGCg -3' miRNA: 3'- -GGCGGAGUAGC-AG---------------GUCCAg------CUCUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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