Results 21 - 40 of 227 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 12155 | 0.73 | 0.576963 |
Target: 5'- cCCGCUcaauacacaaugagCA-CGUCCGGGUCacgGAGGGCCg -3' miRNA: 3'- -GGCGGa-------------GUaGCAGGUCCAG---CUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 19732 | 0.73 | 0.582908 |
Target: 5'- cCCcCCUCcUCGUCCGGGaacgcgacgucgUCGGGGGCg -3' miRNA: 3'- -GGcGGAGuAGCAGGUCC------------AGCUCUCGg -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 52001 | 0.72 | 0.592842 |
Target: 5'- uCCGCaUCAUCGUCUg---CGAGGGCCu -3' miRNA: 3'- -GGCGgAGUAGCAGGuccaGCUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 68252 | 0.72 | 0.592842 |
Target: 5'- uCgGCCUCGacguccUCGUCCAGGgcccCGGaGGCCg -3' miRNA: 3'- -GgCGGAGU------AGCAGGUCCa---GCUcUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 13021 | 0.72 | 0.592842 |
Target: 5'- gCgGCCUgAUCG-CCggGGGUCGcGGGGCCg -3' miRNA: 3'- -GgCGGAgUAGCaGG--UCCAGC-UCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 57775 | 0.72 | 0.602803 |
Target: 5'- cCCGCCguccgCGccgccCGUCUGGGUgaCGAGGGCCu -3' miRNA: 3'- -GGCGGa----GUa----GCAGGUCCA--GCUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 57785 | 0.72 | 0.602803 |
Target: 5'- gCGCCgcc-CGUCUGGGUgaCGAGGGCCu -3' miRNA: 3'- gGCGGaguaGCAGGUCCA--GCUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 106741 | 0.72 | 0.612785 |
Target: 5'- -gGCC-CAUCGUCCGGGcgCGGGGGg- -3' miRNA: 3'- ggCGGaGUAGCAGGUCCa-GCUCUCgg -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 50680 | 0.72 | 0.622781 |
Target: 5'- uCUGCCUCugugcGUCG-CCGGGgacUCGGcGAGCCg -3' miRNA: 3'- -GGCGGAG-----UAGCaGGUCC---AGCU-CUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 8741 | 0.72 | 0.622781 |
Target: 5'- aCGCCUCGaCGgccccgaccccCCAGGcagccgCGAGAGCCu -3' miRNA: 3'- gGCGGAGUaGCa----------GGUCCa-----GCUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 139138 | 0.71 | 0.642786 |
Target: 5'- aCCGCggCAUcCG-CCGcGGUCGAGAGCg -3' miRNA: 3'- -GGCGgaGUA-GCaGGU-CCAGCUCUCGg -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 45006 | 0.71 | 0.651781 |
Target: 5'- gUGCCggaggCGUUGUUCAGGUgggccgcCGAGAGCUc -3' miRNA: 3'- gGCGGa----GUAGCAGGUCCA-------GCUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 25898 | 0.71 | 0.65278 |
Target: 5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3' miRNA: 3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 84462 | 0.71 | 0.65278 |
Target: 5'- cCCGCCUCuggguUCGUUCGGcUCGcuAGAGUCu -3' miRNA: 3'- -GGCGGAGu----AGCAGGUCcAGC--UCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 60765 | 0.71 | 0.65278 |
Target: 5'- gCGCCUCG--GUCC-GGUUGGGGGCg -3' miRNA: 3'- gGCGGAGUagCAGGuCCAGCUCUCGg -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 13041 | 0.71 | 0.65278 |
Target: 5'- uCCGUuucagCUCGUCGcCCAGGcgCGccAGGGCCg -3' miRNA: 3'- -GGCG-----GAGUAGCaGGUCCa-GC--UCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 151406 | 0.71 | 0.65278 |
Target: 5'- uCgGCCUCGgaGUCgGGGUCG-GAGUCg -3' miRNA: 3'- -GgCGGAGUagCAGgUCCAGCuCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 18385 | 0.71 | 0.672714 |
Target: 5'- -gGCCccaCAUCGUCCAGG-CGGGGGaCg -3' miRNA: 3'- ggCGGa--GUAGCAGGUCCaGCUCUCgG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 81774 | 0.71 | 0.672714 |
Target: 5'- uCCGCCaucugCAUCGUCgGGa--GGGGGCCg -3' miRNA: 3'- -GGCGGa----GUAGCAGgUCcagCUCUCGG- -5' |
|||||||
21387 | 3' | -56.7 | NC_004812.1 | + | 79291 | 0.71 | 0.672714 |
Target: 5'- cCCGuCCUCGUCGUCUucGGcGUCGuc-GCCg -3' miRNA: 3'- -GGC-GGAGUAGCAGG--UC-CAGCucuCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home