miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 36286 0.7 0.802693
Target:  5'- cGCGGCGGGAgGGgggucggGGUCUcccagggacGCGGCGGg -3'
miRNA:   3'- -CGUCGUCCUgCCa------CUAGA---------CGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 124238 0.7 0.802693
Target:  5'- gGCGGCGGGccugGCGGgggGcgCgcGCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC----UGCCa--CuaGa-CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 75697 0.69 0.811723
Target:  5'- cCAGCAGcccccCGGUGAUgcGCAGCAGCc -3'
miRNA:   3'- cGUCGUCcu---GCCACUAgaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 72306 0.69 0.820584
Target:  5'- gGCGGgGGGACGGaucGAUCgggcGCGGCcgGGCg -3'
miRNA:   3'- -CGUCgUCCUGCCa--CUAGa---CGUCG--UUG- -5'
21389 3' -54.2 NC_004812.1 + 19394 0.69 0.837758
Target:  5'- cCAGCAGGGCcaggacggcggGGUGA-CUcagccgccGCAGCAGCc -3'
miRNA:   3'- cGUCGUCCUG-----------CCACUaGA--------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 27187 0.69 0.846056
Target:  5'- uCGGcCAGGACGGcccgCcGCAGCGACg -3'
miRNA:   3'- cGUC-GUCCUGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 79193 0.69 0.846056
Target:  5'- -aGGCuGGACGGcggGGUCcacgucggGCGGCGGCg -3'
miRNA:   3'- cgUCGuCCUGCCa--CUAGa-------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 20048 0.69 0.846056
Target:  5'- aGCAGCacguGGaGGCGGUcgcgGGUCcucgGCGGCAGCc -3'
miRNA:   3'- -CGUCG----UC-CUGCCA----CUAGa---CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 4807 0.69 0.846056
Target:  5'- uGguGCGGGcGCGG-GGUCgGCAcGCGGCc -3'
miRNA:   3'- -CguCGUCC-UGCCaCUAGaCGU-CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 35708 0.69 0.846056
Target:  5'- uGguGCGGGcGCGG-GGUCgGCAcGCGGCc -3'
miRNA:   3'- -CguCGUCC-UGCCaCUAGaCGU-CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 153994 0.69 0.85733
Target:  5'- cGgGGCGGGGCcggcgcggagaguccGGUGccGUCgGCGGCGGCg -3'
miRNA:   3'- -CgUCGUCCUG---------------CCAC--UAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 123093 0.69 0.85733
Target:  5'- cGgGGCGGGGCcggcgcggagaguccGGUGccGUCgGCGGCGGCg -3'
miRNA:   3'- -CgUCGUCCUG---------------CCAC--UAGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 149007 0.68 0.862035
Target:  5'- uGCGGCGGGcCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 69602 0.68 0.862035
Target:  5'- cGCAGCAGcccgaacucGCGGUagccGAUCUcGCGGUAGCc -3'
miRNA:   3'- -CGUCGUCc--------UGCCA----CUAGA-CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 77912 0.68 0.862035
Target:  5'- --cGCgAGGGCcuGGaUGcgCUGCAGCAGCg -3'
miRNA:   3'- cguCG-UCCUG--CC-ACuaGACGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 79610 0.68 0.862035
Target:  5'- uGCAGCAcGGccGCGGUGAgg-GCGGCc-- -3'
miRNA:   3'- -CGUCGU-CC--UGCCACUagaCGUCGuug -5'
21389 3' -54.2 NC_004812.1 + 18813 0.68 0.862035
Target:  5'- -aGGCGGGGCGG--GUgUGCGGCGGg -3'
miRNA:   3'- cgUCGUCCUGCCacUAgACGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 43 0.68 0.862035
Target:  5'- cGCGGCGGGccGCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC--UGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 156453 0.68 0.862035
Target:  5'- cGCGGCGGGccGCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCC--UGCCacuaGaCGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 23499 0.68 0.862035
Target:  5'- uGCGGCGGGcCGGg---C-GCGGCGGCg -3'
miRNA:   3'- -CGUCGUCCuGCCacuaGaCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.