miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21389 3' -54.2 NC_004812.1 + 106552 0.67 0.923177
Target:  5'- cGCAGCGGGcGCGGUGGUCcacguuaaucgccagGgGGCccGCg -3'
miRNA:   3'- -CGUCGUCC-UGCCACUAGa--------------CgUCGu-UG- -5'
21389 3' -54.2 NC_004812.1 + 1242 0.67 0.922614
Target:  5'- -uGGC-GGACGGcuuGUCUGCGGCuGACu -3'
miRNA:   3'- cgUCGuCCUGCCac-UAGACGUCG-UUG- -5'
21389 3' -54.2 NC_004812.1 + 42352 0.67 0.922614
Target:  5'- cGCGGgucuuCGGGGCGGUG-UUUGUcGCGGCc -3'
miRNA:   3'- -CGUC-----GUCCUGCCACuAGACGuCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 36714 0.67 0.922614
Target:  5'- gGCuGCGGGGCGcGgcgGGcUCUGCgggccGGCGGCg -3'
miRNA:   3'- -CGuCGUCCUGC-Ca--CU-AGACG-----UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 19029 0.67 0.922614
Target:  5'- cGCAGCGcGGGCGGcagccUCUcggccGCGGCGGCc -3'
miRNA:   3'- -CGUCGU-CCUGCCacu--AGA-----CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 5813 0.67 0.922614
Target:  5'- gGCuGCGGGGCGcGgcgGGcUCUGCgggccGGCGGCg -3'
miRNA:   3'- -CGuCGUCCUGC-Ca--CU-AGACG-----UCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 71946 0.67 0.922614
Target:  5'- gGC-GCGGGGCGGcc--CUGCcGCGACg -3'
miRNA:   3'- -CGuCGUCCUGCCacuaGACGuCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 50587 0.67 0.922614
Target:  5'- gGCGGCAGGcCGG-GAUC-GCcgGGCAc- -3'
miRNA:   3'- -CGUCGUCCuGCCaCUAGaCG--UCGUug -5'
21389 3' -54.2 NC_004812.1 + 24844 0.67 0.922614
Target:  5'- cGCGGCAcgcgccgcGGGCGGcGcggCUGCGGgGGCg -3'
miRNA:   3'- -CGUCGU--------CCUGCCaCua-GACGUCgUUG- -5'
21389 3' -54.2 NC_004812.1 + 126750 0.67 0.922614
Target:  5'- -uGGC-GGACGGcuuGUCUGCGGCuGACu -3'
miRNA:   3'- cgUCGuCCUGCCac-UAGACGUCG-UUG- -5'
21389 3' -54.2 NC_004812.1 + 10399 0.67 0.916854
Target:  5'- cCGGCGGGgugagggggaucACGGaGGUCUcggagaGCAGCGACu -3'
miRNA:   3'- cGUCGUCC------------UGCCaCUAGA------CGUCGUUG- -5'
21389 3' -54.2 NC_004812.1 + 63991 0.67 0.916854
Target:  5'- cGCAGCGGGGCGaacGcgC-GCAGCAu- -3'
miRNA:   3'- -CGUCGUCCUGCca-CuaGaCGUCGUug -5'
21389 3' -54.2 NC_004812.1 + 125418 0.67 0.916854
Target:  5'- cCAGCGGGACGacc--CUGCGGaCGACg -3'
miRNA:   3'- cGUCGUCCUGCcacuaGACGUC-GUUG- -5'
21389 3' -54.2 NC_004812.1 + 60071 0.67 0.910845
Target:  5'- aGCGGCAGGGCGGaGcgCacGCGGgCGAg -3'
miRNA:   3'- -CGUCGUCCUGCCaCuaGa-CGUC-GUUg -5'
21389 3' -54.2 NC_004812.1 + 92622 0.67 0.910845
Target:  5'- gGCAGCAGGAagcccuucuggcCGGcGAggcGCAGCAGg -3'
miRNA:   3'- -CGUCGUCCU------------GCCaCUagaCGUCGUUg -5'
21389 3' -54.2 NC_004812.1 + 81739 0.67 0.904588
Target:  5'- cGCGGCGccGGACGGccgccCUGCGGCGc- -3'
miRNA:   3'- -CGUCGU--CCUGCCacua-GACGUCGUug -5'
21389 3' -54.2 NC_004812.1 + 106686 0.67 0.900716
Target:  5'- cCGGCGGGACGGUGGcgauccagccgucgCUGC-GCGu- -3'
miRNA:   3'- cGUCGUCCUGCCACUa-------------GACGuCGUug -5'
21389 3' -54.2 NC_004812.1 + 138102 0.67 0.898086
Target:  5'- -uGGCGGGAUGG-GGUCUcCGGCucGACg -3'
miRNA:   3'- cgUCGUCCUGCCaCUAGAcGUCG--UUG- -5'
21389 3' -54.2 NC_004812.1 + 147127 0.67 0.898086
Target:  5'- cCGGgGGGACGGgcgugCUGCucGCAGCg -3'
miRNA:   3'- cGUCgUCCUGCCacua-GACGu-CGUUG- -5'
21389 3' -54.2 NC_004812.1 + 3920 0.68 0.891343
Target:  5'- gGCGGCGGGGCc--GcgCgGCGGCGGCa -3'
miRNA:   3'- -CGUCGUCCUGccaCuaGaCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.