Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
223 | 5' | -58.4 | AC_000008.1 | + | 27200 | 1.05 | 0.000365 |
Target: 5'- gUUCGCCAGCAACCUACGCGCGCAGCAc -3' miRNA: 3'- -AAGCGGUCGUUGGAUGCGCGCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 6630 | 0.75 | 0.085766 |
Target: 5'- -gCGCCuGCuGCCaUGCGCGgGCGGCAa -3' miRNA: 3'- aaGCGGuCGuUGG-AUGCGCgCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 16407 | 0.74 | 0.102327 |
Target: 5'- cUCgGUUAGCGGCCUGCGCGUGCccguGCGc -3' miRNA: 3'- aAG-CGGUCGUUGGAUGCGCGCGu---CGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 12674 | 0.74 | 0.105365 |
Target: 5'- --gGCCGuggcGCAGCgUgaGCGCGCGCAGCAg -3' miRNA: 3'- aagCGGU----CGUUGgA--UGCGCGCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 23372 | 0.72 | 0.136764 |
Target: 5'- aUCGCCAGC-ACCUucuCGUGCGUGGgGu -3' miRNA: 3'- aAGCGGUCGuUGGAu--GCGCGCGUCgU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 5473 | 0.72 | 0.153319 |
Target: 5'- -cCG-CGGCGuggcCCUugGCGCGCAGCu -3' miRNA: 3'- aaGCgGUCGUu---GGAugCGCGCGUCGu -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 24467 | 0.71 | 0.157287 |
Target: 5'- cUCGCgCAGCAACCgcuCGCGauucaggccaugcCGCAGCu -3' miRNA: 3'- aAGCG-GUCGUUGGau-GCGC-------------GCGUCGu -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 24400 | 0.71 | 0.181565 |
Target: 5'- --gGUCGGCGGCCgccacgugUGCGCGCGCGGg- -3' miRNA: 3'- aagCGGUCGUUGG--------AUGCGCGCGUCgu -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 10797 | 0.7 | 0.202874 |
Target: 5'- -gCGCUAGCuuuuuuGGCCacuggcCGCGCGCAGCGu -3' miRNA: 3'- aaGCGGUCG------UUGGau----GCGCGCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 7017 | 0.69 | 0.225707 |
Target: 5'- cUCGgCGGUGACCUGCacgucuaGgGCGCAGUAg -3' miRNA: 3'- aAGCgGUCGUUGGAUG-------CgCGCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 27226 | 0.69 | 0.238883 |
Target: 5'- ---aCCAGCu-CCUGCccGCGCGCGGCGc -3' miRNA: 3'- aagcGGUCGuuGGAUG--CGCGCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 25083 | 0.69 | 0.238883 |
Target: 5'- --gGCCAGUGGCCaaaaaaGCuaGCGCAGCAg -3' miRNA: 3'- aagCGGUCGUUGGa-----UGcgCGCGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 31775 | 0.69 | 0.24538 |
Target: 5'- -cCGCUGGUcccgGGCCUAcCGCGCGC-GCAa -3' miRNA: 3'- aaGCGGUCG----UUGGAU-GCGCGCGuCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 12191 | 0.68 | 0.265753 |
Target: 5'- --gGCUGGCGguggcACCcGCGCGCGCuGGCAa -3' miRNA: 3'- aagCGGUCGU-----UGGaUGCGCGCG-UCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 16181 | 0.68 | 0.277894 |
Target: 5'- gUCGCCAccgccgccgacccgGCAcuGCCgcccaACGCGCgGCGGCGg -3' miRNA: 3'- aAGCGGU--------------CGU--UGGa----UGCGCG-CGUCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 23167 | 0.68 | 0.280081 |
Target: 5'- cUCGCCuuCGAUCUcaGCGCaGCGguGCAg -3' miRNA: 3'- aAGCGGucGUUGGA--UGCG-CGCguCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 17530 | 0.68 | 0.287473 |
Target: 5'- gUCGCCAGCccGugCUGgccccgauuucCGUGCGCAGgGu -3' miRNA: 3'- aAGCGGUCG--UugGAU-----------GCGCGCGUCgU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 23674 | 0.67 | 0.310567 |
Target: 5'- -cCGCCGacGUuGCCaGCGCGCGCGGg- -3' miRNA: 3'- aaGCGGU--CGuUGGaUGCGCGCGUCgu -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 22139 | 0.67 | 0.326732 |
Target: 5'- cUCGcCCAGCAGgCgcggGCGgGUGguGCGa -3' miRNA: 3'- aAGC-GGUCGUUgGa---UGCgCGCguCGU- -5' |
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223 | 5' | -58.4 | AC_000008.1 | + | 19637 | 0.66 | 0.343512 |
Target: 5'- -cCGCCcGuCGGCCggugcgACGUGCGCGGUu -3' miRNA: 3'- aaGCGGuC-GUUGGa-----UGCGCGCGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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