miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
223 5' -58.4 AC_000008.1 + 8277 0.66 0.358256
Target:  5'- -aCGCCGcGCgAGCCcaaaguccagaugucCGCGCGCGGCGg -3'
miRNA:   3'- aaGCGGU-CG-UUGGau-------------GCGCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 13436 0.66 0.360904
Target:  5'- -cUGCCAGUGGCgCauaGCGaUGCGCGGCAg -3'
miRNA:   3'- aaGCGGUCGUUG-Ga--UGC-GCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 4519 0.66 0.369827
Target:  5'- gUUGCCcGCGACCauuagAgGUGCGgCGGCAg -3'
miRNA:   3'- aAGCGGuCGUUGGa----UgCGCGC-GUCGU- -5'
223 5' -58.4 AC_000008.1 + 27120 0.66 0.377986
Target:  5'- -gCGCCAGC-ACCUGuCGUcaGCGCcauuaugAGCAa -3'
miRNA:   3'- aaGCGGUCGuUGGAU-GCG--CGCG-------UCGU- -5'
223 5' -58.4 AC_000008.1 + 18092 0.66 0.3789
Target:  5'- -cCGCCGcGCAugCgacggugcgACGCGCGCcGCc -3'
miRNA:   3'- aaGCGGU-CGUugGa--------UGCGCGCGuCGu -5'
223 5' -58.4 AC_000008.1 + 8661 0.66 0.3789
Target:  5'- -gCGCgGGCaggagcugGugCUGCGCGCGUAGg- -3'
miRNA:   3'- aaGCGgUCG--------UugGAUGCGCGCGUCgu -5'
223 5' -58.4 AC_000008.1 + 24345 0.66 0.387193
Target:  5'- -gCGCCAGUGcgccauuAUCUGCGaCGCGUuGCAa -3'
miRNA:   3'- aaGCGGUCGU-------UGGAUGC-GCGCGuCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.