miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22959 5' -59 NC_005137.2 + 23564 0.66 0.790142
Target:  5'- aCAgCGauuguguugaGCAGCCGUuGACGuuGCCa -3'
miRNA:   3'- gGUgGUgg--------CGUCGGCGuUUGCggCGG- -5'
22959 5' -59 NC_005137.2 + 108889 0.66 0.790142
Target:  5'- aCGCUugaCGCgguucuuacaaGGCCGCAcgAACGCUGCa -3'
miRNA:   3'- gGUGGug-GCG-----------UCGGCGU--UUGCGGCGg -5'
22959 5' -59 NC_005137.2 + 30999 0.66 0.790142
Target:  5'- cCCA--ACCGC-GCaCGCuggucGGCGCCGCUa -3'
miRNA:   3'- -GGUggUGGCGuCG-GCGu----UUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 96588 0.66 0.790142
Target:  5'- cCCGCgCAaaCGCAacGCgGCGGgcGCGUCGCCg -3'
miRNA:   3'- -GGUG-GUg-GCGU--CGgCGUU--UGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 6550 0.66 0.790142
Target:  5'- gUCAUCGCCGguCAGuucacauucaaCCGCcgaucuGAACGCCGUCg -3'
miRNA:   3'- -GGUGGUGGC--GUC-----------GGCG------UUUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 63786 0.66 0.790142
Target:  5'- gCGCgACCGUcGCCGC-GGCGgCGUUg -3'
miRNA:   3'- gGUGgUGGCGuCGGCGuUUGCgGCGG- -5'
22959 5' -59 NC_005137.2 + 110720 0.66 0.790142
Target:  5'- gCGCCAagaCGCAGgUGCGGGCGCacaucgGCg -3'
miRNA:   3'- gGUGGUg--GCGUCgGCGUUUGCGg-----CGg -5'
22959 5' -59 NC_005137.2 + 87092 0.66 0.787452
Target:  5'- aCGCCguGCaCGCGGCCGUuaacaacggccaacAAGCGCCuuggGUCa -3'
miRNA:   3'- gGUGG--UG-GCGUCGGCG--------------UUUGCGG----CGG- -5'
22959 5' -59 NC_005137.2 + 45841 0.66 0.781128
Target:  5'- uUACaagaGCAuCCGCGuuGGCGCCGCCg -3'
miRNA:   3'- gGUGguggCGUcGGCGU--UUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 123222 0.66 0.781128
Target:  5'- aCC-UCACCaaGGCUGC--GCGCCGCg -3'
miRNA:   3'- -GGuGGUGGcgUCGGCGuuUGCGGCGg -5'
22959 5' -59 NC_005137.2 + 122581 0.66 0.781128
Target:  5'- aCCGCgCGCUGCAGCa--AAAC-CCGCg -3'
miRNA:   3'- -GGUG-GUGGCGUCGgcgUUUGcGGCGg -5'
22959 5' -59 NC_005137.2 + 65754 0.66 0.781128
Target:  5'- aCCAUCAaacaCGgAGCgGCAcccAAUGCCGUUg -3'
miRNA:   3'- -GGUGGUg---GCgUCGgCGU---UUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 112445 0.66 0.781128
Target:  5'- uCgGCCGuuggaCGCGGCgGCAggaugggcGACGgCGCCg -3'
miRNA:   3'- -GgUGGUg----GCGUCGgCGU--------UUGCgGCGG- -5'
22959 5' -59 NC_005137.2 + 18554 0.66 0.781128
Target:  5'- aCgAUUACCGCAucguGuuGCGAccGCGCCGUUu -3'
miRNA:   3'- -GgUGGUGGCGU----CggCGUU--UGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 112621 0.66 0.781128
Target:  5'- cCCAaaGCgGCGGCaGUAGGCGUCGUUg -3'
miRNA:   3'- -GGUggUGgCGUCGgCGUUUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 110449 0.66 0.781128
Target:  5'- -uGCaCACCGCGGCCGgCGcguacACGgggucacuaaCCGCCa -3'
miRNA:   3'- ggUG-GUGGCGUCGGC-GUu----UGC----------GGCGG- -5'
22959 5' -59 NC_005137.2 + 48889 0.66 0.771985
Target:  5'- aCugCGCCGC-GCUGCG-GCuUCGCCu -3'
miRNA:   3'- gGugGUGGCGuCGGCGUuUGcGGCGG- -5'
22959 5' -59 NC_005137.2 + 88030 0.66 0.771985
Target:  5'- gCCACCGCCGaggcgGGCCacCAcgugggacGGCGUgGCCa -3'
miRNA:   3'- -GGUGGUGGCg----UCGGc-GU--------UUGCGgCGG- -5'
22959 5' -59 NC_005137.2 + 25479 0.66 0.771985
Target:  5'- -uGCCGCCGUacagaguaacaGGuCUGCucgacauGGCGCCGUCa -3'
miRNA:   3'- ggUGGUGGCG-----------UC-GGCGu------UUGCGGCGG- -5'
22959 5' -59 NC_005137.2 + 106846 0.66 0.771985
Target:  5'- gUugCGCaCGCAGUacgCGCAgauuGugGCCGCg -3'
miRNA:   3'- gGugGUG-GCGUCG---GCGU----UugCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.