miRNA display CGI


Results 1 - 20 of 424 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 74916 0.74 0.329754
Target:  5'- gGCGCGgCUggcggccuucGCGCGCGCGGCCgCGCgGa -3'
miRNA:   3'- -CGUGCaGA----------UGCGCGCGUUGGgGCGgC- -5'
25511 5' -59 NC_005337.1 + 87620 0.75 0.281569
Target:  5'- uGCGCGau--CGCGCGCAGCCCCGaCUc -3'
miRNA:   3'- -CGUGCagauGCGCGCGUUGGGGC-GGc -5'
25511 5' -59 NC_005337.1 + 68917 0.75 0.294741
Target:  5'- aGCGCGUgUGCGUGUGCGGCaucgacccguaCCCGCgCGg -3'
miRNA:   3'- -CGUGCAgAUGCGCGCGUUG-----------GGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 42371 0.75 0.313278
Target:  5'- cGCACGUCgugaccggcgACccggaggcgccgcgGCGCGCGGCCUCGCUGu -3'
miRNA:   3'- -CGUGCAGa---------UG--------------CGCGCGUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 125973 0.75 0.315391
Target:  5'- cGCGCGga-ACGCGCGgcugcaGACCCCGCUGc -3'
miRNA:   3'- -CGUGCagaUGCGCGCg-----UUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 6894 0.75 0.315391
Target:  5'- cCAUGUCgcGCGCGCGCGgguCCgCGCCGg -3'
miRNA:   3'- cGUGCAGa-UGCGCGCGUu--GGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 16972 0.74 0.321795
Target:  5'- uGCGCGgagGCGUccaccuccagcacGCGgGACCCCGCCGa -3'
miRNA:   3'- -CGUGCagaUGCG-------------CGCgUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 47605 0.74 0.322513
Target:  5'- gGCgACG-CcGCGCGCGCGGCCgCGCUGa -3'
miRNA:   3'- -CG-UGCaGaUGCGCGCGUUGGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 23092 0.74 0.327569
Target:  5'- gGCAuCGU--GCGCGCGguggucagcaacuuCAACCCCGCCGu -3'
miRNA:   3'- -CGU-GCAgaUGCGCGC--------------GUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 132048 0.75 0.281569
Target:  5'- cGCGCGguucCUGCGCGCGCucgcGGCCCgGgCCGc -3'
miRNA:   3'- -CGUGCa---GAUGCGCGCG----UUGGGgC-GGC- -5'
25511 5' -59 NC_005337.1 + 100740 0.76 0.262693
Target:  5'- uGCACGUCggcgacgACGCGUGCAGCCggCGCaCGg -3'
miRNA:   3'- -CGUGCAGa------UGCGCGCGUUGGg-GCG-GC- -5'
25511 5' -59 NC_005337.1 + 56848 0.76 0.250688
Target:  5'- gGCACGgCUuCGUGCGCAugCaCCGCCa -3'
miRNA:   3'- -CGUGCaGAuGCGCGCGUugG-GGCGGc -5'
25511 5' -59 NC_005337.1 + 21180 0.8 0.158061
Target:  5'- cGCGCGgacCUGCGCGCGCAGgUCCGCg- -3'
miRNA:   3'- -CGUGCa--GAUGCGCGCGUUgGGGCGgc -5'
25511 5' -59 NC_005337.1 + 13921 0.79 0.166128
Target:  5'- uCGgGUCguggGCGgGCGCAGCCCCGUCGu -3'
miRNA:   3'- cGUgCAGa---UGCgCGCGUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 133485 0.77 0.211699
Target:  5'- aGCugGUCUGCcucgucgucggcgGCGCGCAGCacauggCCGCCGu -3'
miRNA:   3'- -CGugCAGAUG-------------CGCGCGUUGg-----GGCGGC- -5'
25511 5' -59 NC_005337.1 + 121991 0.77 0.222655
Target:  5'- uGCGCGagcucCUGCGCGCgggguGCGACCCgGCCGc -3'
miRNA:   3'- -CGUGCa----GAUGCGCG-----CGUUGGGgCGGC- -5'
25511 5' -59 NC_005337.1 + 125265 0.77 0.22804
Target:  5'- uGCACGUaCUcAUGCGCuGCAGCCCCGgCa -3'
miRNA:   3'- -CGUGCA-GA-UGCGCG-CGUUGGGGCgGc -5'
25511 5' -59 NC_005337.1 + 16436 0.77 0.22804
Target:  5'- cCAcCGcCUGCGUGCGC-ACCCCGCCc -3'
miRNA:   3'- cGU-GCaGAUGCGCGCGuUGGGGCGGc -5'
25511 5' -59 NC_005337.1 + 109164 0.77 0.22804
Target:  5'- aCGCGUCcGCGCGCGCcGCgCCGCgCGg -3'
miRNA:   3'- cGUGCAGaUGCGCGCGuUGgGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 30380 0.76 0.244858
Target:  5'- aGCACGUCcauguCGCGCGCGGCCagcaGCUGg -3'
miRNA:   3'- -CGUGCAGau---GCGCGCGUUGGgg--CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.