miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 127211 1.09 0.001466
Target:  5'- uGCACGUCUACGCGCGCAACCCCGCCGc -3'
miRNA:   3'- -CGUGCAGAUGCGCGCGUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 38356 0.81 0.135945
Target:  5'- aGCGCGag-GCGCGCGCGGCCgCCGUCGc -3'
miRNA:   3'- -CGUGCagaUGCGCGCGUUGG-GGCGGC- -5'
25511 5' -59 NC_005337.1 + 21180 0.8 0.158061
Target:  5'- cGCGCGgacCUGCGCGCGCAGgUCCGCg- -3'
miRNA:   3'- -CGUGCa--GAUGCGCGCGUUgGGGCGgc -5'
25511 5' -59 NC_005337.1 + 13921 0.79 0.166128
Target:  5'- uCGgGUCguggGCGgGCGCAGCCCCGUCGu -3'
miRNA:   3'- cGUgCAGa---UGCgCGCGUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 110727 0.78 0.202189
Target:  5'- -gGCGUgUACGCGgGgcaGGCCCCGCCGg -3'
miRNA:   3'- cgUGCAgAUGCGCgCg--UUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 42539 0.78 0.207147
Target:  5'- cGCGCGUggccgggggCUACGUGCGCuACCCCaCCGg -3'
miRNA:   3'- -CGUGCA---------GAUGCGCGCGuUGGGGcGGC- -5'
25511 5' -59 NC_005337.1 + 133485 0.77 0.211699
Target:  5'- aGCugGUCUGCcucgucgucggcgGCGCGCAGCacauggCCGCCGu -3'
miRNA:   3'- -CGugCAGAUG-------------CGCGCGUUGg-----GGCGGC- -5'
25511 5' -59 NC_005337.1 + 133485 0.77 0.211699
Target:  5'- aGCugGUCUGCcucgucgucggcgGCGCGCAGCacauggCCGCCGu -3'
miRNA:   3'- -CGugCAGAUG-------------CGCGCGUUGg-----GGCGGC- -5'
25511 5' -59 NC_005337.1 + 130166 0.77 0.217379
Target:  5'- cGCGCGUCUccGCGCGCGCGgugaggACgCUGCUGa -3'
miRNA:   3'- -CGUGCAGA--UGCGCGCGU------UGgGGCGGC- -5'
25511 5' -59 NC_005337.1 + 121991 0.77 0.222655
Target:  5'- uGCGCGagcucCUGCGCGCgggguGCGACCCgGCCGc -3'
miRNA:   3'- -CGUGCa----GAUGCGCG-----CGUUGGGgCGGC- -5'
25511 5' -59 NC_005337.1 + 125265 0.77 0.22804
Target:  5'- uGCACGUaCUcAUGCGCuGCAGCCCCGgCa -3'
miRNA:   3'- -CGUGCA-GA-UGCGCG-CGUUGGGGCgGc -5'
25511 5' -59 NC_005337.1 + 109164 0.77 0.22804
Target:  5'- aCGCGUCcGCGCGCGCcGCgCCGCgCGg -3'
miRNA:   3'- cGUGCAGaUGCGCGCGuUGgGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 16436 0.77 0.22804
Target:  5'- cCAcCGcCUGCGUGCGC-ACCCCGCCc -3'
miRNA:   3'- cGU-GCaGAUGCGCGCGuUGGGGCGGc -5'
25511 5' -59 NC_005337.1 + 113090 0.77 0.22804
Target:  5'- aCGCGgacCUGCGCGCGCAGgUCCGCgCGa -3'
miRNA:   3'- cGUGCa--GAUGCGCGCGUUgGGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 23925 0.77 0.233535
Target:  5'- cGCGCGcccgCggcagGCGCGCGCGacgcGCCCgGCCGg -3'
miRNA:   3'- -CGUGCa---Ga----UGCGCGCGU----UGGGgCGGC- -5'
25511 5' -59 NC_005337.1 + 30380 0.76 0.244858
Target:  5'- aGCACGUCcauguCGCGCGCGGCCagcaGCUGg -3'
miRNA:   3'- -CGUGCAGau---GCGCGCGUUGGgg--CGGC- -5'
25511 5' -59 NC_005337.1 + 86669 0.76 0.244858
Target:  5'- aGCGCGgCcGCGCGCGCGGCgUCGCCc -3'
miRNA:   3'- -CGUGCaGaUGCGCGCGUUGgGGCGGc -5'
25511 5' -59 NC_005337.1 + 15619 0.76 0.250688
Target:  5'- gGUuCGUCUcCGUGCGCGucgcGCCCCGCCc -3'
miRNA:   3'- -CGuGCAGAuGCGCGCGU----UGGGGCGGc -5'
25511 5' -59 NC_005337.1 + 56848 0.76 0.250688
Target:  5'- gGCACGgCUuCGUGCGCAugCaCCGCCa -3'
miRNA:   3'- -CGUGCaGAuGCGCGCGUugG-GGCGGc -5'
25511 5' -59 NC_005337.1 + 5583 0.76 0.256633
Target:  5'- cCGCGUCgccaGCGCGCGugCCCGgCGg -3'
miRNA:   3'- cGUGCAGaug-CGCGCGUugGGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.