miRNA display CGI


Results 21 - 40 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 57050 0.76 0.256633
Target:  5'- gGCGCGUaCUACGC-CGCAGCCagGCCGc -3'
miRNA:   3'- -CGUGCA-GAUGCGcGCGUUGGggCGGC- -5'
25511 5' -59 NC_005337.1 + 5583 0.76 0.256633
Target:  5'- cCGCGUCgccaGCGCGCGugCCCGgCGg -3'
miRNA:   3'- cGUGCAGaug-CGCGCGUugGGGCgGC- -5'
25511 5' -59 NC_005337.1 + 100740 0.76 0.262693
Target:  5'- uGCACGUCggcgacgACGCGUGCAGCCggCGCaCGg -3'
miRNA:   3'- -CGUGCAGa------UGCGCGCGUUGGg-GCG-GC- -5'
25511 5' -59 NC_005337.1 + 81459 0.75 0.281569
Target:  5'- aGCGCGUaguCGCGCaGCAGgUCCGCCGu -3'
miRNA:   3'- -CGUGCAgauGCGCG-CGUUgGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 132048 0.75 0.281569
Target:  5'- cGCGCGguucCUGCGCGCGCucgcGGCCCgGgCCGc -3'
miRNA:   3'- -CGUGCa---GAUGCGCGCG----UUGGGgC-GGC- -5'
25511 5' -59 NC_005337.1 + 87620 0.75 0.281569
Target:  5'- uGCGCGau--CGCGCGCAGCCCCGaCUc -3'
miRNA:   3'- -CGUGCagauGCGCGCGUUGGGGC-GGc -5'
25511 5' -59 NC_005337.1 + 68917 0.75 0.294741
Target:  5'- aGCGCGUgUGCGUGUGCGGCaucgacccguaCCCGCgCGg -3'
miRNA:   3'- -CGUGCAgAUGCGCGCGUUG-----------GGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 42371 0.75 0.313278
Target:  5'- cGCACGUCgugaccggcgACccggaggcgccgcgGCGCGCGGCCUCGCUGu -3'
miRNA:   3'- -CGUGCAGa---------UG--------------CGCGCGUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 6894 0.75 0.315391
Target:  5'- cCAUGUCgcGCGCGCGCGgguCCgCGCCGg -3'
miRNA:   3'- cGUGCAGa-UGCGCGCGUu--GGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 125973 0.75 0.315391
Target:  5'- cGCGCGga-ACGCGCGgcugcaGACCCCGCUGc -3'
miRNA:   3'- -CGUGCagaUGCGCGCg-----UUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 16972 0.74 0.321795
Target:  5'- uGCGCGgagGCGUccaccuccagcacGCGgGACCCCGCCGa -3'
miRNA:   3'- -CGUGCagaUGCG-------------CGCgUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 47605 0.74 0.322513
Target:  5'- gGCgACG-CcGCGCGCGCGGCCgCGCUGa -3'
miRNA:   3'- -CG-UGCaGaUGCGCGCGUUGGgGCGGC- -5'
25511 5' -59 NC_005337.1 + 23092 0.74 0.327569
Target:  5'- gGCAuCGU--GCGCGCGguggucagcaacuuCAACCCCGCCGu -3'
miRNA:   3'- -CGU-GCAgaUGCGCGC--------------GUUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 133340 0.74 0.329754
Target:  5'- aGCAUGUCcGCGCucCGCcGCCUCGCCGc -3'
miRNA:   3'- -CGUGCAGaUGCGc-GCGuUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 133340 0.74 0.329754
Target:  5'- aGCAUGUCcGCGCucCGCcGCCUCGCCGc -3'
miRNA:   3'- -CGUGCAGaUGCGc-GCGuUGGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 74916 0.74 0.329754
Target:  5'- gGCGCGgCUggcggccuucGCGCGCGCGGCCgCGCgGa -3'
miRNA:   3'- -CGUGCaGA----------UGCGCGCGUUGGgGCGgC- -5'
25511 5' -59 NC_005337.1 + 39023 0.74 0.337115
Target:  5'- cGCGCGUCUGcCGCGCGCAcgagugcacggACCaguCGCgCGa -3'
miRNA:   3'- -CGUGCAGAU-GCGCGCGU-----------UGGg--GCG-GC- -5'
25511 5' -59 NC_005337.1 + 80427 0.74 0.337115
Target:  5'- aGC-CGUCcGCgGCGCGCAGCgCCaGCCGg -3'
miRNA:   3'- -CGuGCAGaUG-CGCGCGUUGgGG-CGGC- -5'
25511 5' -59 NC_005337.1 + 2381 0.74 0.337115
Target:  5'- cCGCGUCcACGUGCGCG--CCCGCCu -3'
miRNA:   3'- cGUGCAGaUGCGCGCGUugGGGCGGc -5'
25511 5' -59 NC_005337.1 + 25311 0.74 0.344595
Target:  5'- cGCGCGUCgaccgGCGCGUGUacGACCCCaaCGa -3'
miRNA:   3'- -CGUGCAGa----UGCGCGCG--UUGGGGcgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.