miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 32102 0.68 0.962893
Target:  5'- gCACGUuguacauGGCGGcgCGCaUGUccagCGUGUCCa -3'
miRNA:   3'- gGUGCG-------UCGCCaaGCG-AUA----GCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 33220 0.67 0.98603
Target:  5'- uUCACGCAgguGCGGUUCGUgagcaCG-AUCUc -3'
miRNA:   3'- -GGUGCGU---CGCCAAGCGaua--GCaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 34584 0.72 0.869119
Target:  5'- gCGCGCAGCGcGUcgaaGCUGUCGcacgCCa -3'
miRNA:   3'- gGUGCGUCGC-CAag--CGAUAGCaua-GG- -5'
25519 5' -51.3 NC_005337.1 + 34627 0.72 0.869119
Target:  5'- gCCGCGCGGCGaugcCGCgcacGUCcGUGUCCc -3'
miRNA:   3'- -GGUGCGUCGCcaa-GCGa---UAG-CAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 34855 0.66 0.98913
Target:  5'- aUAUGCGGCGGcgCGCcAUCc--UCCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGaUAGcauAGG- -5'
25519 5' -51.3 NC_005337.1 + 35046 0.66 0.992744
Target:  5'- gCGCGUGGUGGacCGC-GUCGaaGUCCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGaUAGCa-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 36871 0.73 0.801777
Target:  5'- aCCACGCGguugcaguagauGCGGUUCGCgcggcgcggCGUggCCg -3'
miRNA:   3'- -GGUGCGU------------CGCCAAGCGaua------GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 37443 0.66 0.987655
Target:  5'- gCCACGCcGCGGcugCGCaccCGcagGUCCg -3'
miRNA:   3'- -GGUGCGuCGCCaa-GCGauaGCa--UAGG- -5'
25519 5' -51.3 NC_005337.1 + 38903 0.67 0.982295
Target:  5'- gUCGCGCGGCcg-UCGCUGUUGccUUCg -3'
miRNA:   3'- -GGUGCGUCGccaAGCGAUAGCauAGG- -5'
25519 5' -51.3 NC_005337.1 + 39645 0.66 0.987655
Target:  5'- aCACGCAGCGGcgcggcCGCguggggcgCGUGgccCCg -3'
miRNA:   3'- gGUGCGUCGCCaa----GCGaua-----GCAUa--GG- -5'
25519 5' -51.3 NC_005337.1 + 40019 0.69 0.942963
Target:  5'- uCCGCGCGGUGGagaUGCUAgcgggCGUcgUCg -3'
miRNA:   3'- -GGUGCGUCGCCaa-GCGAUa----GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 40547 0.66 0.987655
Target:  5'- gCGCGCGGUGGUgcgGUUcUCGaggaUGUCCu -3'
miRNA:   3'- gGUGCGUCGCCAag-CGAuAGC----AUAGG- -5'
25519 5' -51.3 NC_005337.1 + 42359 0.71 0.890874
Target:  5'- uCCACGCGGCGa--CGCacGUCGUGaCCg -3'
miRNA:   3'- -GGUGCGUCGCcaaGCGa-UAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 43017 0.66 0.991665
Target:  5'- cUCACGCAGCuGcaCuCUAgCGUGUCCu -3'
miRNA:   3'- -GGUGCGUCGcCaaGcGAUaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 43828 0.67 0.984246
Target:  5'- uCCACGCugcAGCGGgccggcggCGCgguggagAUCGUGUaCUg -3'
miRNA:   3'- -GGUGCG---UCGCCaa------GCGa------UAGCAUA-GG- -5'
25519 5' -51.3 NC_005337.1 + 44650 0.68 0.966594
Target:  5'- gCGcCGCAGCGGg-CGCUA-CGUGggcgacUCCg -3'
miRNA:   3'- gGU-GCGUCGCCaaGCGAUaGCAU------AGG- -5'
25519 5' -51.3 NC_005337.1 + 44929 0.73 0.792542
Target:  5'- aCACGUGuccgcGCGGaUCGCUcaucuUCGUGUCCa -3'
miRNA:   3'- gGUGCGU-----CGCCaAGCGAu----AGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 47894 0.66 0.987655
Target:  5'- gCGCGCAGUGGUaaaCGCggcCGUcaCCa -3'
miRNA:   3'- gGUGCGUCGCCAa--GCGauaGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 50769 0.66 0.987655
Target:  5'- gCACGCGuGCGGUUCccgcggucccuGCUcUCGcuguUCCa -3'
miRNA:   3'- gGUGCGU-CGCCAAG-----------CGAuAGCau--AGG- -5'
25519 5' -51.3 NC_005337.1 + 52583 0.67 0.980166
Target:  5'- aCgGCGCGGCGG--CGCUggCGg--CCa -3'
miRNA:   3'- -GgUGCGUCGCCaaGCGAuaGCauaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.