miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25519 5' -51.3 NC_005337.1 + 66767 0.71 0.890874
Target:  5'- gCACGC-GCGGgcCGCUGggCGUGcucUCCa -3'
miRNA:   3'- gGUGCGuCGCCaaGCGAUa-GCAU---AGG- -5'
25519 5' -51.3 NC_005337.1 + 42359 0.71 0.890874
Target:  5'- uCCACGCGGCGa--CGCacGUCGUGaCCg -3'
miRNA:   3'- -GGUGCGUCGCcaaGCGa-UAGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 66085 0.71 0.90419
Target:  5'- gCCGCgGCGGCGGaggCGCUGUgCGgcGUCUg -3'
miRNA:   3'- -GGUG-CGUCGCCaa-GCGAUA-GCa-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 12334 0.71 0.90419
Target:  5'- uCCGCGUGGUGGUgcagCGCcGUCc-GUCCg -3'
miRNA:   3'- -GGUGCGUCGCCAa---GCGaUAGcaUAGG- -5'
25519 5' -51.3 NC_005337.1 + 62764 0.71 0.90419
Target:  5'- gCgACGCGGCGGUggaaCGCgaaGUCGggcaccgcGUCCg -3'
miRNA:   3'- -GgUGCGUCGCCAa---GCGa--UAGCa-------UAGG- -5'
25519 5' -51.3 NC_005337.1 + 81467 0.71 0.90419
Target:  5'- gUCGCGCAGCaGGUcCGCcGUgGUGggcUCCg -3'
miRNA:   3'- -GGUGCGUCG-CCAaGCGaUAgCAU---AGG- -5'
25519 5' -51.3 NC_005337.1 + 74573 0.7 0.91048
Target:  5'- gCCGCGCGgcacGCGGacgCGCUGUCGcgcAUCg -3'
miRNA:   3'- -GGUGCGU----CGCCaa-GCGAUAGCa--UAGg -5'
25519 5' -51.3 NC_005337.1 + 65716 0.7 0.91048
Target:  5'- gCACGCGGUGGggCGCgccCGgcgCCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGauaGCauaGG- -5'
25519 5' -51.3 NC_005337.1 + 31639 0.7 0.915332
Target:  5'- aCACGCGGUGGcagaucagcgagUCGCgGUCGggguagcgGUCCg -3'
miRNA:   3'- gGUGCGUCGCCa-----------AGCGaUAGCa-------UAGG- -5'
25519 5' -51.3 NC_005337.1 + 127634 0.7 0.916521
Target:  5'- aCCGCGCGGCGGUcuUCaacccuGCgg-CGUG-CCg -3'
miRNA:   3'- -GGUGCGUCGCCA--AG------CGauaGCAUaGG- -5'
25519 5' -51.3 NC_005337.1 + 1338 0.7 0.921174
Target:  5'- gCCGCgGCGGCGGUaguugaacuccgCGCUcgCGUcAUCUg -3'
miRNA:   3'- -GGUG-CGUCGCCAa-----------GCGAuaGCA-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 1851 0.7 0.922312
Target:  5'- gCGCGCAGuUGGUg-GCcg-CGUGUCCg -3'
miRNA:   3'- gGUGCGUC-GCCAagCGauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 91448 0.7 0.922312
Target:  5'- aCGCGCAGCGGgcgGUUGgcCGUuAUCCg -3'
miRNA:   3'- gGUGCGUCGCCaagCGAUa-GCA-UAGG- -5'
25519 5' -51.3 NC_005337.1 + 22750 0.7 0.927851
Target:  5'- gCACGCGGCGGagCGCgggcUCgGUAUgCg -3'
miRNA:   3'- gGUGCGUCGCCaaGCGau--AG-CAUAgG- -5'
25519 5' -51.3 NC_005337.1 + 9150 0.7 0.927851
Target:  5'- gCCGCuuGGCGG-UCGCUAgccUCGUcgUCa -3'
miRNA:   3'- -GGUGcgUCGCCaAGCGAU---AGCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 3435 0.7 0.933139
Target:  5'- cCCGCGCuuggacauGCGG-UCGag--CGUGUCCu -3'
miRNA:   3'- -GGUGCGu-------CGCCaAGCgauaGCAUAGG- -5'
25519 5' -51.3 NC_005337.1 + 86904 0.69 0.937684
Target:  5'- cCCACGCGGuCGGUgaagaGCaugccgaugauguUGUCGUcggcGUCCa -3'
miRNA:   3'- -GGUGCGUC-GCCAag---CG-------------AUAGCA----UAGG- -5'
25519 5' -51.3 NC_005337.1 + 15779 0.69 0.938176
Target:  5'- -gACGaGGCGGcuagUCGCUGUCGcUGUCg -3'
miRNA:   3'- ggUGCgUCGCCa---AGCGAUAGC-AUAGg -5'
25519 5' -51.3 NC_005337.1 + 40019 0.69 0.942963
Target:  5'- uCCGCGCGGUGGagaUGCUAgcgggCGUcgUCg -3'
miRNA:   3'- -GGUGCGUCGCCaa-GCGAUa----GCAuaGG- -5'
25519 5' -51.3 NC_005337.1 + 88871 0.69 0.947502
Target:  5'- gCCGCGCAGUGGagCGUcagcaccggGUCGgugGUCUc -3'
miRNA:   3'- -GGUGCGUCGCCaaGCGa--------UAGCa--UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.