miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 5' -53.1 NC_005337.1 + 2695 0.66 0.972857
Target:  5'- gGAGCUg---CggCGUGGGGAC-GCGg -3'
miRNA:   3'- gCUCGAaguaGaaGCACCUCUGgCGC- -5'
25662 5' -53.1 NC_005337.1 + 45011 0.66 0.972857
Target:  5'- --cGCggcCAUCUaCGUGGGGAgCGUGg -3'
miRNA:   3'- gcuCGaa-GUAGAaGCACCUCUgGCGC- -5'
25662 5' -53.1 NC_005337.1 + 66930 0.66 0.969973
Target:  5'- uGGGCUgCGcCaUCGUGGAGGgCGUGu -3'
miRNA:   3'- gCUCGAaGUaGaAGCACCUCUgGCGC- -5'
25662 5' -53.1 NC_005337.1 + 110247 0.66 0.969973
Target:  5'- cCGGGCgUgAUCUUCGUGGuuacGGACaUGCc -3'
miRNA:   3'- -GCUCGaAgUAGAAGCACC----UCUG-GCGc -5'
25662 5' -53.1 NC_005337.1 + 122050 0.66 0.966877
Target:  5'- cCGAGUg-CcgCgUCGUGGAGAcgcugcCCGCGg -3'
miRNA:   3'- -GCUCGaaGuaGaAGCACCUCU------GGCGC- -5'
25662 5' -53.1 NC_005337.1 + 92593 0.66 0.966877
Target:  5'- aCGuGCUUCGaCgaCGUGGAcGuCCGCGc -3'
miRNA:   3'- -GCuCGAAGUaGaaGCACCU-CuGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 55022 0.66 0.963561
Target:  5'- aGGGCgacuUCGUgcuggcCUUCGUGGAGcgGCUGCu -3'
miRNA:   3'- gCUCGa---AGUA------GAAGCACCUC--UGGCGc -5'
25662 5' -53.1 NC_005337.1 + 44560 0.67 0.956249
Target:  5'- gGAGCgguaccggGUCUUCGUGGAG-CUGUc -3'
miRNA:   3'- gCUCGaag-----UAGAAGCACCUCuGGCGc -5'
25662 5' -53.1 NC_005337.1 + 83541 0.67 0.952243
Target:  5'- aCGAGCaUCGUC-UCGUcGcGGGACgGCa -3'
miRNA:   3'- -GCUCGaAGUAGaAGCA-C-CUCUGgCGc -5'
25662 5' -53.1 NC_005337.1 + 127831 0.67 0.952243
Target:  5'- gGGGgUUCuUCUUCccggacucGGAGGCCGCGc -3'
miRNA:   3'- gCUCgAAGuAGAAGca------CCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 53786 0.67 0.952243
Target:  5'- gCGGcGCaacaugUUCAcCggCGUGGAGAUCGCGg -3'
miRNA:   3'- -GCU-CG------AAGUaGaaGCACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 42552 0.67 0.947998
Target:  5'- gCGGGCgcuggugCggCUgCGgcUGGAGGCCGCGg -3'
miRNA:   3'- -GCUCGaa-----GuaGAaGC--ACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 131434 0.67 0.94351
Target:  5'- gCGGaCUcCGUCUcCGcGGAGGCCGCGc -3'
miRNA:   3'- -GCUcGAaGUAGAaGCaCCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 30567 0.67 0.94351
Target:  5'- gGAGCUcCc----CGUGGAGGCCGUGc -3'
miRNA:   3'- gCUCGAaGuagaaGCACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 81012 0.67 0.938777
Target:  5'- uCGGGCgcgcgaaGUCcgggCGUGGAGAUgGCGg -3'
miRNA:   3'- -GCUCGaag----UAGaa--GCACCUCUGgCGC- -5'
25662 5' -53.1 NC_005337.1 + 29515 0.67 0.933797
Target:  5'- gGAGCUUCuccagcacggcgGUCUUCGcgcGGcGGCCGUGc -3'
miRNA:   3'- gCUCGAAG------------UAGAAGCa--CCuCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 1985 0.67 0.933797
Target:  5'- aCGAGCUcCAgCUcgCGUcGGAcGACCGCa -3'
miRNA:   3'- -GCUCGAaGUaGAa-GCA-CCU-CUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 60974 0.67 0.933797
Target:  5'- aGAGCUUCuUCacgUCGaaGGGGAgCGCGu -3'
miRNA:   3'- gCUCGAAGuAGa--AGCa-CCUCUgGCGC- -5'
25662 5' -53.1 NC_005337.1 + 66329 0.67 0.933285
Target:  5'- gCGGGCUggcgacaCGUgcUCGUGGAGcgcgaccACCGCGg -3'
miRNA:   3'- -GCUCGAa------GUAgaAGCACCUC-------UGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 97257 0.68 0.926951
Target:  5'- aGAGCaUCcUCUUcgaccccacgucccCGcggcUGGAGACCGCGg -3'
miRNA:   3'- gCUCGaAGuAGAA--------------GC----ACCUCUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.